Input parameters:

  Query = ENSMUSP00000031726 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031726, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80  
WD40-rpts                                        (______________________WD 1___________________

Query       81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320 
WD40-rpts      _____________)(___________________WD 6___________________)   (_________________W

Query      321 TDDGMAVATGSWDSFLKIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000031726 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-83       9.56  509.59  8.4e-06       37.5%     48.85
  WD 2:  Seg  7    87-125      8.74  475.59  2.4e-05       15.0%     57.18
  WD 3:  Seg 11   133-170      7.07  406.69  0.00021       30.0%     50.87
  WD 4:  Seg 15   174-212     10.43  545.61  2.8e-06       42.5%     55.97
  WD 5:  Seg 19   216-254     10.25  537.90  3.5e-06       35.0%     52.99
  WD 6:  Seg 23   255-298      8.55  467.65  3.1e-05       30.0%     55.38
  WD 7:  Seg 27   302-340      9.91  524.21  5.3e-06       30.0%     49.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-83     AGLDPVGRIQMR----TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 2   87-125    -T---------N----KVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 3  133-170    -V---------R----VSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD
   WD 4  174-212    -G---------Q----QTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD
   WD 5  216-254    -S---------M----CRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFD
   WD 6  255-298    LR---------ADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWD
   WD 7  302-340    -G---------D----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN

   WD40 Template    TG---------E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD