Input parameters:

  Query = ENSMUSP00000031771 (Len=628)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000031771, Len=628):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGISPEPPLVPTPMS 80  
WD40-rpts                                                                                      

Query       81 PSSKSVSTPSDAGSQDSGDLGPLTRTLQWDTDPSVLQLQSDSELGRRLHKLGVSKVTQVDFLPREVVSYSKETQTPLATH 160 
WD40-rpts                                                                                      

Query      161 QSEEDEEDEEMVEPKIGHDSELENQEKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSG 240 
WD40-rpts                                                                                      

Query      241 RELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVF 320 
WD40-rpts                                                                          (___________

Query      321 HCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCS 400 
WD40-rpts      ________WD 1___________________)           (_________________WD 2_______________

Query      401 WSLDMLSTPQESMELVYNKSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVG 480 
WD40-rpts      _)                                                      (____________________WD 

Query      481 PIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEG 560 
WD40-rpts      3___________________)   (_________________WD 4_________________)(_______________

Query      561 ASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWTRFARTLVEIRANRADSEEEGAVELAA 628 
WD40-rpts      _____WD 5___________________)                                       

5 WD40-repeats found in QUERY=ENSMUSP00000031771 (Len=628):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   309-352      3.59  263.13  0.01757       30.0%     41.49
  WD 2:  Seg 11   364-402      4.77  311.78  0.00391       25.0%     45.61
  WD 3:  Seg 18   457-501      4.92  317.97  0.00323       25.0%     42.88
  WD 4:  Seg 21   505-544      4.29  291.78  0.00726       20.0%     52.15
  WD 5:  Seg 25   545-589      4.10  284.05  0.00922       20.0%     55.97

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  309-352    MKF-----KKTTPEYVFHCQSSVMSVCF--ARFH------PNLV-VGGTYSGQIVLWD
   WD 2  364-402    TP--------LS---AAAHTHPVYCVNVVGTQ-N------AHNL-ITVSTDGKMCSWS
   WD 3  457-501    -AG-----IGEV---FEGHQGPVTGINC--HM-AVGPIDFSHLF-VTSSFDWTVKLWT
   WD 4  505-544    -NK-----PLYS---FEDNADYVYDVMW--SP-V------HPALFACVDGMGRLDLWN
   WD 5  545-589    LNSDTEVPTASV---AIEGASALNRVRW--AQ-G------GKEV-AVGDSEGRIWIYD

   WD40 Template    TGE-----CLRT---LSGHTSGVTSVSF--SP-D------GKRL-VSGSEDGTIKVWD