Input parameters:

  Query = ENSMUSP00000034239 (Len=658)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000034239, Len=658):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVA 80  
WD40-rpts              (__________________WD 1_________________)   (_________________WD 2______

Query       81 GSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFN 240 
WD40-rpts      ______________)   (_________________WD 5________________)   (________________WD 

Query      241 PDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVTQDPVQANQ 320 
WD40-rpts      6________________)   (________________WD 7________________)  (________________WD

Query      321 PLTQQTPNPGVSLRRIYERPSTTCSKPQRVKHNSESERRSPSSEDDRDERESRAEIQNAEDYNEIFQPKNSISRTPPRRS 400 
WD40-rpts       8_______________)                                                              

Query      401 EPFPAPPEDDAATVKEVSKPSPAMDVQLPQLPVPNLEVPARPSVMTSTPAPKGEPDIIPATRNEPIGLKASDFLPAVKVP 480 
WD40-rpts                                                                                      

Query      481 QQAELVDEDAMSQIRKGHDTMFVVLTSRHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCT 560 
WD40-rpts                                                                                      

Query      561 TVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCFKQLKSISGLVKSKSGLS 640 
WD40-rpts                                                                                      

Query      641 GRHGSAFRELHLLMASLD 658 
WD40-rpts                        

8 WD40-repeats found in QUERY=ENSMUSP00000034239 (Len=658):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-49       7.48  423.65  0.00012       27.5%     53.07
  WD 2:  Seg  5    53-91      10.03  528.95  4.6e-06       42.5%     53.85
  WD 3:  Seg  9    95-133     10.64  554.29  2.1e-06       45.0%     52.77
  WD 4:  Seg 13   137-175     10.46  546.83  2.7e-06       42.5%     53.89
  WD 5:  Seg 16   179-217      9.86  521.93  5.7e-06       42.5%     50.33
  WD 6:  Seg 20   221-258      7.35  418.31  0.00014       32.5%     56.17
  WD 7:  Seg 24   262-299      4.67  307.47  0.00446       12.5%     51.88
  WD 8:  Seg 28   302-338      3.92  276.49  0.01164        7.5%      7.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-49     TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWS
   WD 2   53-91     -PNCIMSLTGHTSPVESVRL-NTPEELIVAGSQSGSIRVWD
   WD 3   95-133    -AKILRTLMGHKANICSLDF-HPYGEFVASGSQDTNIKLWD
   WD 4  137-175    -KGCVFRYRGHSQAVRCLRF-SPDGKWLASAADDHTVKLWD
   WD 5  179-217    -GKMMSEFPGHTGPVNVVEF-HPNEYLLASGSSDRTIRFWD
   WD 6  221-258    -FQVVSCIEGEPGPVRSVLF-NPDGCCLYSGCQD-SLRVYG
   WD 7  262-299    -ERCFDVVLVNWGKVADLAI-CNDQLIGVAFSQS-NVSSYV
   WD 8  302-338    LTRVTRTGTVTQDPVQANQP-LTQQ---TPNPGVSLRRIYE

   WD40 Template    TGECLRTLSGHTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD