Input parameters:
Query = ENSMUSP00000034437 (Len=991)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000034437, Len=991):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAARWSSENVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAAS 80
WD40-rpts (_________________WD 1________________) (__________________WD 2_________
Query 81 SNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKN 160
WD40-rpts ________) (_________________WD 3_________________) (_________________WD 4_
Query 161 ANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKA 240
WD40-rpts _______________) (_________________WD 5_________________) (________________
Query 241 RYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRRQKEGSKDYQLVTWSRDQTLRMWRVDYQM 320
WD40-rpts ___WD 6___________________) (___________________WD 7___________________)(____
Query 321 QRLCANDILDGVDEFIESISLLPEPEKTPHPQDIDHQPSLSHGEEDAIKEDPPSSLLEEKRSDQLGLPQTLQQEFSLINV 400
WD40-rpts _________________WD 8____________________)
Query 401 QIRNVNVEMDAADRSCTVSVHCSNHRVKMLVTFPAQYPNNAAPSFQFINPTTITSAVKAKLLKILKDTSLQKVKRNQSCL 480
WD40-rpts
Query 481 EPCLRQLVSCLESFVNQEDSASSNPFALQNSVTPPLPTFARVTTAYGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTMH 560
WD40-rpts
Query 561 RAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERKSRRWKSKREGSDSGNRP 640
WD40-rpts
Query 641 IKAAGKVIIQDVSCLLPVHKSLGELYILNVNDTQETCQKNATSAMLVGRKDLVQVWSLATVATDLCLGPKSDPDLETPWA 720
WD40-rpts
Query 721 RHPFGRQLLESLWGDRESTRVCGPPLSGARLAHYCQLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRSSNLVVSHSRY 800
WD40-rpts
Query 801 PSFTSSGSCSSMSDPGFNTGGWNIGRETEHISSPWGESSPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFK 880
WD40-rpts
Query 881 KCYGEILYRWGLREKRAEVLKFVSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGH 960
WD40-rpts
Query 961 GGHTSHMMEWFRTQEVCPTGCGCHCLLESTF 991
WD40-rpts
8 WD40-repeats found in QUERY=ENSMUSP00000034437 (Len=991):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 5-43 3.28 250.23 0.02611 12.5% 46.45
WD 2: Seg 5 49-89 3.05 240.49 0.03517 7.5% 49.75
WD 3: Seg 9 95-134 7.32 417.22 0.00015 35.0% 54.19
WD 4: Seg 13 138-176 6.90 399.86 0.00025 17.5% 52.16
WD 5: Seg 17 181-220 7.15 410.07 0.00019 25.0% 50.72
WD 6: Seg 21 224-267 4.39 296.05 0.00636 12.5% 50.09
WD 7: Seg 25 272-315 6.27 373.50 0.00058 25.0% 53.48
WD 8: Seg 29 316-362 3.78 270.64 0.01394 15.0% 23.14
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 5-43 WSSENV------VVEFRDSQATAMSVDC-LGQ-----H-AVLS-----G--RRFLYIVN
WD 2 49-89 -EGHRK------ISRQSKWDIGAVQWNP-HDS---FAH-YFAA-----SS-NQRVDLYK
WD 3 95-134 -GEVGT------TLQGHTRVISDLDWAVFEPD-----L-LVTS-----SV-DTYIYIWD
WD 4 138-176 -TRKPT------VALSAVAGASQVKWNK-KNA-----N-YLAT-----SH-DGDVRIWD
WD 5 181-220 -STAVE------YLAAHLSKIHGLDWHP-DSE-----HIFATS-----SQ-DNSVKFWD
WD 6 224-267 -PRKYL------NILPCQVPVWKARYTP-FSN-----G-LVTVMVPQLRR-ENSLLLWN
WD 7 272-315 -NAPVH------TFVGHDDVVLEFQWRR-QKEGSKDYQ-LVTW-----SR-DQTLRMWR
WD 8 316-362 VDYQMQRLCANDILDGVDEFIESISLLP-EPE-----K-TPHP-----QDIDHQPSLSH
WD40 Template TGECLR------TLSGHTSGVTSVSFSP-DGK-----R-LVSG-----SE-DGTIKVWD