Input parameters:

  Query = ENSMUSP00000034820 (Len=764)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000034820, Len=764):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVT 160 
WD40-rpts                                                                                      

Query      161 GSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDS 240 
WD40-rpts                                                                                      

Query      241 DGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTP 320 
WD40-rpts                                                                                      

Query      321 TPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAA 400 
WD40-rpts                                                                                      

Query      401 AAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEV 480 
WD40-rpts                              (_________________WD 1_________________)   (____________

Query      481 VCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRI 560 
WD40-rpts      ____WD 2________________)(_____________________WD 3____________________)     (__

Query      561 KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLR 640 
WD40-rpts      _______________WD 4________________)   (_________________WD 5________________)(_

Query      641 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 720 
WD40-rpts      _________________WD 6_________________)  (_________________WD 7________________)

Query      721 TPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 764 
WD40-rpts      (__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000034820 (Len=764):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   425-464      5.46  340.13  0.00162       10.0%     29.80
  WD 2:  Seg  8   468-505      6.25  372.74  0.00059       22.5%     52.69
  WD 3:  Seg 12   506-552      7.30  416.36  0.00015       25.0%     47.10
  WD 4:  Seg 15   558-596      8.42  462.35  3.7e-05       30.0%     55.49
  WD 5:  Seg 19   600-638      9.84  521.26  5.9e-06       35.0%     53.27
  WD 6:  Seg 23   639-679      6.81  396.12  0.00029       25.0%     52.42
  WD 7:  Seg 27   682-720      8.29  457.01  4.3e-05       30.0%     53.20
  WD 8:  Seg 31   721-761      7.47  423.38  0.00012       32.5%     50.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  425-464    GLP-------SSLAS-I-PGGKPAYSFHVSADGQMQPVPFPHDALAGPG
   WD 2  468-505    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  506-552    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  558-596    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  600-638    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  639-679    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  682-720    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  721-761    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD