Input parameters:

  Query = ENSMUSP00000035033 (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000035033, Len=905):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQ 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHS 320 
WD40-rpts      ________________)   (_________________WD 7________________)(_________________WD 

Query      321 EVQQANLKAMGDTEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDS 400 
WD40-rpts      8_________________)                                   (__________________WD 9___

Query      401 SEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA 480 
WD40-rpts      _______________)                                   (_________________WD10_______

Query      481 TEESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRT 560 
WD40-rpts      _________)(_________________WD11_________________)(_______________WD12__________

Query      561 MYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTD 640 
WD40-rpts      ____)                                                                           

Query      641 PEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNASMVNKLAEGAE 720 
WD40-rpts                                                                                      

Query      721 RDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPG 800 
WD40-rpts                                                                                      

Query      801 LKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEAKGFQPSRPTAQQEPDGKPASSPVIMASQTTHKEEKSLLELE 880 
WD40-rpts                                                                                      

Query      881 VDLDNLELEDIDTTDINLDEDILDD 905 
WD40-rpts                               

12 WD40-repeats found in QUERY=ENSMUSP00000035033 (Len=905):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.19  370.33  0.00064       22.5%     55.58
  WD 2:  Seg  5    47-85       6.77  394.25  0.00030       20.0%     56.75
  WD 3:  Seg  9    89-127      8.00  445.18  6.2e-05       22.5%     54.55
  WD 4:  Seg 13   128-171      7.81  437.15  8.0e-05       37.5%     55.47
  WD 5:  Seg 17   172-215      8.04  446.71  5.9e-05       37.5%     52.03
  WD 6:  Seg 21   219-257      9.75  517.36  6.6e-06       40.0%     54.73
  WD 7:  Seg 25   261-299      5.04  322.82  0.00277       20.0%     53.58
  WD 8:  Seg 29   300-339      3.41  255.33  0.02234       12.5%     34.08
  WD 9:  Seg 36   375-416      3.72  268.34  0.01497        5.0%     43.19
  WD10:  Seg 44   452-490      3.32  251.88  0.02483       10.0%     37.61
  WD11:  Seg 48   491-530      5.22  330.42  0.00219       17.5%     37.00
  WD12:  Seg 50   531-565      3.03  239.96  0.03574       15.0%     37.33

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--D---IKRKLTARSDRVKSVDLHP-TEPW--MLASLYNGSVCVWN
   WD 2   47-85     -Q--T---LVKTFEVCDLPVRAAKFVA-RKNW--VVTGADDMQIRVFN
   WD 3   89-127    -L--E---RVHMFEAHSDYIRCIAVHP-TQPF--ILTSSDDMLIKLWD
   WD 4  128-171    WD--KKWSCSQVFEGHTHYVMQIVINPKDNNQ--FASASLDRTIKVWQ
   WD 5  172-215    LGSSS---PNFTLEGHEKGVNCIDYYS-GGDKPYLISGADDRLVKIWD
   WD 6  219-257    -K--T---CVQTLEGHAQNVSCASFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---LESTLNYGMERVWCVASLR-GSNN--VALGYDEGSIIVKL
   WD 8  300-339    GR--E---EPAMSMDANGKIIWAKHSE-VQQA--NLKAMGDTEIKDGE
   WD 9  375-416    YIIYT---AMALRNKSFGSAQEFAWAH-DSSE--YAIRESNSIVKIFK
   WD10  452-490    -W--E---NTELIRRIEIQPKHIFWSD-SGEL--VCIATEESFFILKY
   WD11  491-530    LS--E---KVLAAQETHEGVTEDGIED-AFEV--LGEIQEIVKTGLWV
   WD12  531-565    ----------GDCFIYTSSVNRLNYYV-GGEI--VTIAHLDRTMYLLG

   WD40 Template    TG--E---CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD