Input parameters:

  Query = ENSMUSP00000035553 (Len=183)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000035553, Len=183):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEIYKVVKGYKATIQQTLDILFLQEGSEFLSSTDASTRDSADRTIIAWDFRTAAKISNQIFHERYTCPSLALHPREPVF 80  
WD40-rpts         (_____________________WD 1____________________)    (_________________WD 2____

Query       81 LAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTASRACTLQGHTQACLGT 160 
WD40-rpts      ____________)      (__________________WD 3_________________)   (________________

Query      161 TYHPVLPSVLGTCSWGGDIKIWH 183 
WD40-rpts      _WD 4_________________)

4 WD40-repeats found in QUERY=ENSMUSP00000035553 (Len=183):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-50       7.71  433.31  9.0e-05       22.5%     46.26
  WD 2:  Seg  5    55-93       6.58  386.59  0.00038        5.0%     53.40
  WD 3:  Seg  9   100-140      7.15  410.02  0.00019       30.0%     50.67
  WD 4:  Seg 13   144-183      7.57  427.44  0.00011       30.0%     52.07

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-50     IYKVVKGYKATIQQT--LDILFLQE-GSEFLSSTDASTRDSADRTIIAWD
   WD 2   55-93     -AKISNQIFHERYTC--PSLALHPR-EPVFLA-------QTNGNYLALFS
   WD 3  100-140    -MSRRRRYEGHKVEGYAVGCECSPC-GDLLVT-------GSADGRVLMFS
   WD 4  144-183    -ASRACTLQGHTQAC--LGTTYHPVLPSVLGT-------CSWGGDIKIWH

   WD40 Template    TGECLRTLSGHTSGV--TSVSFSPD-GKRLVS-------GSEDGTIKVWD