Input parameters:

  Query = ENSMUSP00000035930 (Len=687)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000035930, Len=687):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKNVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCY 80  
WD40-rpts                                              (__________________WD 1_________________

Query       81 DTYQLSLKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYR 160 
WD40-rpts      )(__________________WD 2__________________)                                     

Query      161 LNLEQGRYLNPLQTDAAENNVCDINAVHGLFATGTIEGRVECWDPRVRKRVGVLDCALNSVTADSEINSLPTISALKFNG 240 
WD40-rpts           (_________________WD 3________________)           (__________________WD 4__

Query      241 ALSMAVGTSTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLVLSADSRIVKMWNKDSGKIFTSLEPEHDLNDVCL 320 
WD40-rpts      ________________)(__________________WD 5__________________)                     

Query      321 YPSSGMLLTANESPKMGIYYIPVLGPAPRWCSFLDNLTEELEENPESTVYDDYKFVTKKDLENLGLTHLIGSPFLRAYMH 400 
WD40-rpts                                                                                      

Query      401 GFFMDIRLYHKVKLMVNPFAYEEYRKDKIRQKIEETRAQRVQLKKLPKVNKELALKLIEEEEEKQKSTLKKKVKSLPNIL 480 
WD40-rpts                                                                                      

Query      481 TDDRFKVMFENPDFQVDEESEEFRLLNPLVSRISEKRKKQLRLLEQQELKDEEEEEPEGKPSDAESSESSDDEKGWVEEV 560 
WD40-rpts                                                                                      

Query      561 RKQRRLLQQEERVKRQEQLKEDQQTVLKPQFYEIKAGEEFRSFKESATKQRLMNKTLEDRLKLEAKHGTLNVSDTTVGSK 640 
WD40-rpts                                                                                      

Query      641 QLTFTLKRSEQQKKQQEAEKLHRQERKNLRRSASHLRSRPRRGRPFH 687 
WD40-rpts                                                     

5 WD40-repeats found in QUERY=ENSMUSP00000035930 (Len=687):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    41-81       4.35  294.41  0.00669       17.5%     41.73
  WD 2:  Seg  6    82-123      3.81  271.91  0.01341       20.0%     46.25
  WD 3:  Seg 14   166-204      6.07  365.51  0.00074       17.5%     35.16
  WD 4:  Seg 18   216-257      3.23  248.10  0.02788       12.5%     27.09
  WD 5:  Seg 21   258-299      3.11  243.04  0.03254       17.5%     44.23

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-81     RRI---ELIQDFEMPTV--CTTIKVSK--DGQYILATGTYKPRVRCYD
   WD 2   82-123    TYQ---LSLKFERCLDSEVVTFEILSD--DYSKI-VFLHNDRYIEFHS
   WD 3  166-204    -GR---YLNPLQTDAAE--NNVCDINA--VHGLF-ATGTIEGRVECWD
   WD 4  216-257    CAL---NSVTADSEINS--LPTISALKFNGALSM-AVGTSTGQVLLYD
   WD 5  258-299    LRSDKPLLVKDHQYGLP--IKSVHFQD--SLDLV-LS-ADSRIVKMWN

   WD40 Template    TGE---CLRTLSGHTSG--VTSVSFSP--DGKRL-VSGSEDGTIKVWD