WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000037654 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000037654 (Len=668) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000037654, Len=668): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSFGIGKTKEVIFSMEEGSVKMFLRGRPVPMLIPDELAPTYSLDTRSELPSSRLKLDWVYPLTSSLSALLEEALGFSSY 80
WD40-rpts
Query 81 GYRGRDCRANLYLLPTGEVVYFVASVAVLYSVEEQRQRHYLGHNDDIKCLAVHPDMVTIATGQVAGTTKEGKPLPPHVRV 160
WD40-rpts (__________________WD 1_________________)
Query 161 WDSVSLSTLHVLGLGVFDRAVCCVAFSKSNGGNLLCAVDESNDHVLSVWDWAKESKVVDSKCSNEAVLVATFHPTDPSLL 240
WD40-rpts (_____________________WD 2_____________________) (_________________WD 3_____
Query 241 ITCGKSHIYFWSLEGGSLSKRQGLFEKHEKPKYVLCVTFLEGGDVVTGDSGGNLYVWGKGGNRITQEVQGAHDGGVFALC 320
WD40-rpts ___________) (________________WD 4________________)(___________________WD
Query 321 ALRDGTLVSGGGRDRRVVLWGSDYSKVQEVEVPEDFGPVRTVAEGRGDTLYVGTTRNSILLGSVHTGFSLLVQGHVEELW 400
WD40-rpts 5__________________) (_________________WD 6________________) (______________
Query 401 GLATHPSRAQFVTCGQDKLVHLWSSETHQPVWSRSIEDPARSAGFHPSGSVLAVGTVTGRWLLLDTETHDLVAIHTDGNE 480
WD40-rpts ___WD 7________________) (_________________WD 8________________) (___________
Query 481 QISVVSFSPDGAYLAVGSHDNLVYVYTVDQGGRKVSRLGKCSGHSSFITHLDWAQDSTCFVTNSGDYEILYWDPVTCKQI 560
WD40-rpts ______WD 9________________) (_________________WD10________________)
Query 561 TSADTVRNVEWATATCVLGFGVFGIWPEGADGTDINAVARSHDGKLLVSADDFGKVHLFSYPCCQPRALSHKYGGHSSHV 640
WD40-rpts (______________________WD11_____________________) (_____________
Query 641 TNVAFLWDDSMALTTGGKDTSVLQWRVA 668
WD40-rpts ____WD12_________________)
 12 WD40-repeats found in QUERY=ENSMUSP00000037654 (Len=668): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 112-152 7.00 403.68 0.00023 25.0% 39.18 WD 2: Seg 11 163-210 5.39 337.25 0.00177 27.5% 46.97 WD 3: Seg 15 214-252 7.29 415.77 0.00016 15.0% 57.96 WD 4: Seg 19 261-298 4.85 315.21 0.00351 25.0% 43.71 WD 5: Seg 23 299-341 7.45 422.20 0.00013 22.5% 54.68 WD 6: Seg 27 345-383 6.76 394.04 0.00030 12.5% 55.59 WD 7: Seg 31 386-424 7.59 428.37 0.00010 15.0% 54.74 WD 8: Seg 35 427-465 6.58 386.28 0.00039 20.0% 55.43 WD 9: Seg 39 469-507 8.76 476.57 2.3e-05 30.0% 58.54 WD10: Seg 43 515-553 8.14 450.85 5.2e-05 32.5% 51.50 WD11: Seg 49 572-620 6.60 387.33 0.00037 22.5% 45.70 WD12: Seg 53 627-666 6.92 400.68 0.00025 30.0% 53.22Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 112-152 VEE--QR---------QRHYLGHNDDIKCLAVH-PDMV----TIATGQVAGTTKEGK WD 2 163-210 SVS---L-----STLHVLGLGVFDRAVCCVAFS-KSNGGNLLCAVDESNDHVLSVWD WD 3 214-252 -ES---K---------VVDSKCSNEAVLVATFH-PTDP----SLLITCGKSHIYFWS WD 4 261-298 -RQ---G---------LFEKHEKPKYVLCVTFL-EGGD-----VVTGDSGGNLYVWG WD 5 299-341 KGGNRIT---------QEVQGAHDGGVFALCAL-RDGT----LVSGGGRDRRVVLWG WD 6 345-383 -SK---V---------QEVEVPEDFGPVRTVAE-GRGD----TLYVGTTRNSILLGS WD 7 386-424 -TG---F---------SLLVQGHVEELWGLATH-PSRA----QFVTCGQDKLVHLWS WD 8 427-465 -TH---Q---------PVWSRSIEDPARSAGFH-PSGS----VLAVGTVTGRWLLLD WD 9 469-507 -HD---L---------VAIHTDGNEQISVVSFS-PDGA----YLAVGSHDNLVYVYT WD10 515-553 -VS---R---------LGKCSGHSSFITHLDWA-QDST----CFVTNSGDYEILYWD WD11 572-620 ATA---TCVLGFGVFGIWPEGADGTDINAVARS-HDGK----LLVSADDFGKVHLFS WD12 627-666 -RA---L---------SHKYGGHSSHVTNVAFLWDDSM----ALTTGGKDTSVLQWR WD40 Template TGE---C---------LRTLSGHTSGVTSVSFS-PDGK----RLVSGSEDGTIKVWD |
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