Input parameters:

  Query = ENSMUSP00000038580 (Len=475)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000038580, Len=475):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTAVATRKRAKPAPGPGAAPVAGKRRRKVDSAADRGKSKGGGKMNEEISSDSESESLAPRKTEEEEEEELEETAQEKKL 80  
WD40-rpts            (_______________WD 1_______________)                                      

Query       81 RLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRLQKSVAKEIQAPAPTDIRVLRGHQLSITCLVITPDDLA 160 
WD40-rpts                                                             (_________________WD 2___

Query      161 IFSAAKDCTIIKWSVETGRKLHVIPRAKKGAQGQPAGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGH 240 
WD40-rpts      _____________)          (___________________WD 3__________________)   (_________

Query      241 RDAVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVF 320 
WD40-rpts      ________WD 4________________)   (_________________WD 5________________)  (______

Query      321 YGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLHGEPGLEQPFWVSSVAALLNTDLVATGSHNARV 400 
WD40-rpts      __________WD 6________________)              (_________________WD 7_____________

Query      401 RLWQCGEGFRQLDPLCDIPLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRLPVSPVAGS 475 
WD40-rpts      ___)(_____________________WD 8____________________)                        

8 WD40-repeats found in QUERY=ENSMUSP00000038580 (Len=475):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-42       6.45  380.93  0.00046       12.5%     -12.07
  WD 2:  Seg  4   136-174      9.22  495.51  1.3e-05       30.0%     54.97
  WD 3:  Seg  9   185-227      8.96  484.69  1.8e-05       32.5%     40.00
  WD 4:  Seg 12   231-269      9.72  516.26  6.8e-06       32.5%     55.68
  WD 5:  Seg 16   273-311      9.45  505.18  9.7e-06       27.5%     53.01
  WD 6:  Seg 20   314-351      7.43  421.65  0.00013       22.5%     53.82
  WD 7:  Seg 25   366-404      7.94  442.52  6.8e-05       17.5%     37.51
  WD 8:  Seg 28   405-451      6.37  377.59  0.00051       30.0%     46.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-42     -------TR-----KRAKPAPGPGAAPVAGKRRRKVDSA--ADRGKSKGG
   WD 2  136-174    -PT---DIR-----VLRGHQLSITCLVITPDDLAIFSAA--KDCTIIKWS
   WD 3  185-227    PRAKKGAQG-----QPAGHSSHVLCMAISSDGKYLASGD--RSKLILIWE
   WD 4  231-269    -CQ---HLY-----TFTGHRDAVSGLAFRKGTHQLYSTS--HDRSVKVWN
   WD 5  273-311    -NS---YVE-----TLFGHQDAVAALDALSRECCVTAGG--RDGTVRVWK
   WD 6  314-351    -EE---SQL-----VFYGHQGSIDCIHLINEE-HMVSGA--DDGSVALWG
   WD 7  366-404    -GL---HGE-----PGLEQPFWVSSVAALLNTDLVATGS--HNARVRLWQ
   WD 8  405-451    CGE---GFRQLDPLCDIPLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR

   WD40 Template    TGE---CLR-----TLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD