Input parameters:

  Query = ENSMUSP00000038635 (Len=437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000038635, Len=437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80  
WD40-rpts        (_________________WD 1________________)   (___________________WD 2____________

Query       81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYP 160 
WD40-rpts      ______)(__________________WD 3_________________)   (__________________WD 4______

Query      161 GSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF 240 
WD40-rpts      ___________)   (_________________WD 5_________________)(____________________WD 6

Query      241 SMDSQFLCASSNTETVHIFKMEHLTDSRPEEPSTWSGYMGKMFMAATNYLPAQVSDMMNQDRAFATGRLNFSGQKNICTL 320 
WD40-rpts      ___________________)                         (__________________________WD 7____

Query      321 STIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLLSSGTTEENKENDLRPSLPPSYAATVARPSTSAASTVPGYS 400 
WD40-rpts      _____________________) (____________________WD 8____________________)           

Query      401 EDGGALRGEVIPEHEFATGPVCLDDENEFPPVSIRNP 437 
WD40-rpts                                           

8 WD40-repeats found in QUERY=ENSMUSP00000038635 (Len=437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.45  381.00  0.00046       15.0%     40.74
  WD 2:  Seg  4    45-87       6.22  371.79  0.00061       20.0%     46.00
  WD 3:  Seg  8    88-128      5.84  355.73  0.00100        7.5%     25.17
  WD 4:  Seg 12   132-172      6.55  385.10  0.00040       15.0%     47.11
  WD 5:  Seg 16   176-215      8.25  455.33  4.5e-05       30.0%     54.33
  WD 6:  Seg 20   216-260      7.26  414.54  0.00016       22.5%     45.95
  WD 7:  Seg 25   286-342      6.49  382.79  0.00043       20.0%     50.46
  WD 8:  Seg 29   344-389      7.21  412.60  0.00017       20.0%     27.26

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     AEA------A-----D-----------------APPG-RVEA----ALSCFSFNQDCTSLAIGT-KAG--YKLFS
   WD 2   45-87     -VE------Q-----L-----------------DQVH-GSNEIPDVYIVERLFSSSLVVVVSHTKPRQ--MNVYH
   WD 3   88-128    FKK------G-----T-----------------EICNYSYSS----NILSIRLNRQRLLVCLEESIYI--HNIKD
   WD 4  132-172    -LK------T-----V-----------------LDIP-SNPT----GLCALSINHSNSYLAYPGSQSTGEIVLYD
   WD 5  176-215    -LK------T-----V-----------------CTIA-AHEG----TLAAITFNSSGSKLASASEKGT-VIRVFS
   WD 6  216-260    VPE------GQKLYEF-----------------RRGM-KRYV----TISSLVFSMDSQFLCASSNTET--VHIFK
   WD 7  286-342    ATN------Y-----LPAQVSDMMNQDRAFATGRLNF-SGQK----NICTLSTIQKLPRLLVASSDGH--LYIYN
   WD 8  344-389    DPQDGGECVL-----I-----------------KTHS-LLSS----GTTEENKENDLRPSLPPSYAAT--VARPS

   WD40 Template    TGE------C-----L-----------------RTLS-GHTS----GVTSVSFSPDGKRLVSGSEDGT--IKVWD