Input parameters:

  Query = ENSMUSP00000038819 (Len=1523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000038819, Len=1523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAALAAGGYTRSDTIEKLSSVMAGVPARRNQSSPPPAPPLCLRRRTRLAAAPEDTVQNRVTLEKVLGITAQNSSGLTCDP 80  
WD40-rpts                             (________________WD 1________________)                   

Query       81 GTGHVAYLAGCVVVVLNPKENKQQHIFNTTRKSLSALAFSPDGKYIVTGENGHRPAVRIWDVEEKTQVAEMLGHKYGVAC 160 
WD40-rpts                          (__________________WD 2_________________)   (_______________

Query      161 VAFSPNMKHIVSMGYQHDMVLNVWDWKKDIVVASNKVSCRVIALSFSEDSSYFVTVGNRHVRFWFLEASTEAKVTSTVPL 240 
WD40-rpts      ___WD 3_________________)  (________________WD 4________________)               

Query      241 VGRSGILGELHNNIFCGVACGRGRMAGNTFCVSYSGLLCQFNEKRVLDKWINLKVSLSSCLCVSDELIFCGCTDGIVRIF 320 
WD40-rpts                                               (_________________WD 5_________________

Query      321 QAHSLLYLTNLPKPHYLGVDVAHGLDSSFLFHRKAEAVYPDTVALTFDPVHQWLSCVYKDHSIYIWDVKDIDEVSKIWSE 400 
WD40-rpts      )                     (____________________WD 6___________________)(____________

Query      401 LFHSSFVWNVEVYPEFEDQRACLPSGTFLTCSSDNTIRFWNLDSASDTRWQKNIFSDSLLKVVYVENDIQHLQDLSHFPD 480 
WD40-rpts      ____________WD 7________________________)                                       

Query      481 RGSENGTPMDMKAGVRVMQVSPDGQHLASGDRSGNLRIHELHFMDELIKVEAHDAEVLCLEYSKPETGVTLLASASRDRL 560 
WD40-rpts       (_________________WD 8________________)   (__________________WD 9______________

Query      561 IHVLNVEKNYNLEQTLDDHSSSITAIKFAGTRDVQMISCGADKSIYFRSAQQASDGLHFVRTHHVAEKTTLYDMDIDITQ 640 
WD40-rpts      ____)     (_________________WD10________________)(_____________________WD11_____

Query      641 KYVAVACQDRNVRVYNTVSGKQKKCYKGSQGDEGSLLKVHVDPSGTFLATSCSDKSISLIDFYSGECVAKMFGHSEIVTG 720 
WD40-rpts      _______________)      (_________________WD12________________)   (_______________

Query      721 MKFTYDCRHLITVSGDSCVFIWHLGPEITTCMKQHLLEINHQEQQQQPKDQKWSGPPSQETYASTPSEIRSLSPGEQTED 800 
WD40-rpts      __WD13________________)                                                         

Query      801 EMEEECEPEELLKTPSKDSLDPDPRCLLTNGKLPLWAKRLLGDDDVADSSAFHAKRSYQPHGRWAERAEQEPLKTILDAW 880 
WD40-rpts                                   (______________________WD14_____________________)  

Query      881 SLDSYFTPMKPENLQDSVLDSVEPQNLAGLLSECSLGNGHTSPGEGLVSYLLHPELGSPKEDNRGHPSYLPLQREATEAS 960 
WD40-rpts       (_________________WD15________________)                (_________________WD16__

Query      961 ELILCSPEAEVSLTGMHREYYEEETEAGPEDQQGDTYLRVSSVSSKDQSPPEDSGESEAELECSFAAAHSSAPQTDPGPH 1040
WD40-rpts      ______________)                                                                 

Query     1041 LTMTAGKPEYPSTEELSQPELPGLGNGSLPQTPEQEKFLRHHFETLTDAPTEELFHGSLGDIKISETEDYFFNPRLSIST 1120
WD40-rpts                                                                                      

Query     1121 QFLSRLQKTSRCPPRLPLHLMKSPEAQPVGQGGNQPKAGPLRAGTGYMSSDGTNVLSGQKAEETQEALSLLDRKPPTPTS 1200
WD40-rpts                                                                                      

Query     1201 VLTTGREQSISAPSSCSYLESTTSSHAKTTRSISLGDSEGPVTAELPQSLHKPLSPGQELQAIPTTVALTSSIKDHEPAP 1280
WD40-rpts                                                                                      

Query     1281 LSWGNHEARASLKLTLSSVCEQLLSPPPQEPPITHVWSQEPVDVPPSMAVTVASFCAPSPVDMSTLGLHSSMFLPKTSAS 1360
WD40-rpts                                                                                      

Query     1361 GPLTPPAHLQLLETRSRVPGSTAALLEPTPDASGVIADSPGHWDTEVPTPELLGSVESVLHRLQTAFQEALDLYRMLVSS 1440
WD40-rpts                                                                                      

Query     1441 SQLGPEQQQAQTELASTFHWILNQLEASNCMAAANLAPPQTLPSPDPLSLPTLCPLASPNLQALLEHYSELLVQAVRRKA 1520
WD40-rpts                                                                                      

Query     1521 RGD 1523
WD40-rpts         

16 WD40-repeats found in QUERY=ENSMUSP00000038819 (Len=1523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    24-61       2.81  230.91  0.04707       15.0%     25.00
  WD 2:  Seg  9   101-141      6.46  381.31  0.00045       25.0%     56.45
  WD 3:  Seg 13   145-185      7.62  429.51  0.00010       37.5%     56.31
  WD 4:  Seg 17   188-225      4.81  313.28  0.00373       17.5%     52.41
  WD 5:  Seg 25   282-321      5.45  339.65  0.00165       10.0%     50.69
  WD 6:  Seg 31   343-387      5.93  359.75  0.00088       22.5%     52.73
  WD 7:  Seg 35   388-441      5.28  332.78  0.00204       25.0%     49.98
  WD 8:  Seg 42   482-520      7.55  426.63  0.00011       30.0%     45.94
  WD 9:  Seg 45   524-565      6.12  367.62  0.00069       25.0%     57.01
  WD10:  Seg 49   571-609      6.19  370.50  0.00063       22.5%     48.46
  WD11:  Seg 52   610-656      4.61  305.11  0.00480       10.0%     46.70
  WD12:  Seg 56   663-701      6.86  398.15  0.00027       22.5%     51.36
  WD13:  Seg 60   705-743      9.04  488.26  1.6e-05       32.5%     58.13
  WD14:  Seg 69   830-878      4.15  286.09  0.00865       12.5%     28.79
  WD15:  Seg 71   882-920      2.91  234.90  0.04169       12.5%      7.15
  WD16:  Seg 72   937-975      3.91  276.08  0.01179       15.0%     14.21

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-61     -GV-----P-----A---------RRNQ-------SSPPPAPPLCLRRRT----------RLAAAP--ED--TVQNRVT
   WD 2  101-141    -NK-----Q-----Q---------HIFN-------TTRKSLSALAFSPDGK---------YIVTGE--NGHRPAVRIWD
   WD 3  145-185    -KT-----Q-----V---------AEML-------GHKYGVACVAFSPNMK---------HIVSMGYQHD--MVLNVWD
   WD 4  188-225    -KD-----I-----V---------VASN-------KVSCRVIALSFSEDSS---------YFVTVG---N--RHVRFWF
   WD 5  282-321    NEK-----R-----V---------LDKW-------INLKVSLSSCLCVSDE---------LIFCGC--TD--GIVRIFQ
   WD 6  343-387    HGLDSSFLF-----H---------RKAE-------AVYPDTVALTFDPVHQ---------WLSCVY--KD--HSIYIWD
   WD 7  388-441    VKD-----IDEVSKI---------WSEL-------FHSSFVWNVEVYPEFEDQRACLPSGTFLTCS--SD--NTIRFWN
   WD 8  482-520    -GS-----E-----N---------GTPM-------DMKAGVRVMQVSPDGQ---------HLASGD--RS--GNLRIHE
   WD 9  524-565    -MD-----E-----L---------IKVE-------AHDAEVLCLEYSKPET------GVTLLASAS--RD--RLIHVLN
   WD10  571-609    --N-----L-----E---------QTLD-------DHSSSITAIKFAGTRD--------VQMISCG--AD--KSIYFRS
   WD11  610-656    AQQ-----A-----S---------DGLHFVRTHHVAEKTTLYDMDIDITQK---------YVAVAC--QD--RNVRVYN
   WD12  663-701    -KK-----C-----Y---------KGSQ-------GDEGSLLKVHVDPSGT---------FLATSC--SD--KSISLID
   WD13  705-743    -GE-----C-----V---------AKMF-------GHSEIVTGMKFTYDCR---------HLITVS--GD--SCVFIWH
   WD14  830-878    NGK-----L-----PLWAKRLLGDDDVA-------DSSAFHAKRSYQPHGR---------WAERAE--QE--PLKTILD
   WD15  882-920    -LD-----S-----Y---------FTPM-------KPENLQDSVLDSVEPQ---------NLAGLL--SE--CSLGNGH
   WD16  937-975    -GS-----P-----K---------EDNR-------GHPSYLPLQREATEAS---------ELILCS--PE--AEVSLTG

   WD40 Template    TGE-----C-----L---------RTLS-------GHTSGVTSVSFSPDGK---------RLVSGS--ED--GTIKVWD