Input parameters:

  Query = ENSMUSP00000038845 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000038845, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVL 80  
WD40-rpts         (___________________WD 1___________________)  (___________________WD 2_______

Query       81 ATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHIL 160 
WD40-rpts      ___________)(_________________WD 3________________)(_____________WD 4___________

Query      161 LWDLQPSSSQAVLASSATLEGRGQLKFTAGRWSPHHNCTQVATASDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNK 240 
WD40-rpts      __)           (_________________WD 5________________)    (_________________WD 6_

Query      241 QYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYNHSHDQLVLTGSSDSRVILSNMVSISSEPFGHLVDDGDIS 320 
WD40-rpts      ________________)    (_________________WD 7_________________)                   

Query      321 DPEEHHAEKSKEPLQDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVINRVPRALKYHILL 386 
WD40-rpts                     (_________________WD 8_________________)           

8 WD40-repeats found in QUERY=ENSMUSP00000038845 (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-47       5.56  344.29  0.00143       20.0%     35.28
  WD 2:  Seg  5    50-92       7.36  418.72  0.00014       15.0%     50.49
  WD 3:  Seg  9    93-131      5.36  336.10  0.00184       10.0%     10.88
  WD 4:  Seg 11   132-163      4.98  320.56  0.00298       22.5%     44.81
  WD 5:  Seg 15   175-213      5.25  331.63  0.00211       22.5%     52.38
  WD 6:  Seg 19   218-257      7.09  407.72  0.00020       25.0%     50.52
  WD 7:  Seg 23   262-301      7.55  426.34  0.00011       25.0%     50.35
  WD 8:  Seg 27   336-375      6.81  395.96  0.00029       22.5%     54.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-47     DAP---VIYGLEFQARALTPQTAET-DAI-RFLVGTQSLKYDNQIHIID
   WD 2   50-92     DENNIINKNVLLHQAGEIWHISASP-ADK-GV----LATCYNKTTDSRV
   WD 3   93-131    -QA---CAAVWRMPKELESGSHESP-DDP-AS----TAQTLELLCHLDN
   WD 4  132-163    ------------SAQGNVACVVWEP-MGDGKK----VISLADSHILLWD
   WD 5  175-213    SSA---TLE--GRGQLKFTAGRWSP-HHNCTQ----VATASDTTLRGWD
   WD 6  218-257    -SQ---IYCIENAHGQLVRDLDFNP-NKQYYL----ASCGDDCKVKFWD
   WD 7  262-301    -TE---PVKTLEEHSHWVWSVRYNHSHDQ-LV----LTGSSDSRVILSN
   WD 8  336-375    -DN---VIATYEEHEDSVYAVDWASADPW-LF----ASLSYDGRLVINR

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-DGK-RL----VSGSEDGTIKVWD