Input parameters:

  Query = ENSMUSP00000039010 (Len=388)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000039010, Len=388):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPTCEESPAEDSNNEEEDLDSTKAAPRIRDTPEDIVLEAPASGLAFHPTRDLLAAGDVDGDVFVFAYSCQEGETKELWS 80  
WD40-rpts                         (_____________________WD 1_____________________)       (_____

Query       81 SGHHLKSCRAVVFSEDGQKLVTVSKDKAIHILDVEQGQLERRISKAHSAPINSVLLVDENALVTGDDTGGIRLWDQRKEG 160 
WD40-rpts      ____________WD 2________________)   (_________________WD 3________________)   (_

Query      161 PLMDMRQHEEYIADMALDPAKKLLLTASGDGCLGVFNIKRRRFELLSEPQSGDLTSVALMKYGKKVACGSSEGTIYLFNW 240 
WD40-rpts      ________________WD 4________________)   (_________________WD 5________________) 

Query      241 NGFGATSDRFALRAESIDCIVPVTENLLCTGSTDGIIRAVNILPNRVVGTVGQHAGEPVEALALSHCGHFLASSGHDQRL 320 
WD40-rpts        (_________________WD 6________________)   (_________________WD 7______________

Query      321 KFWDMTQLRTVVVDDYRRRKKKGGPLRALSSKAWSTDDFFAGLREDEEDAKAPEEVVRESDDDDDDSD 388 
WD40-rpts      ___)           (_________________WD 8________________)              

8 WD40-repeats found in QUERY=ENSMUSP00000039010 (Len=388):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-67       6.91  400.04  0.00025       17.5%     41.35
  WD 2:  Seg  5    75-113      9.01  487.00  1.7e-05       32.5%     55.43
  WD 3:  Seg  9   117-155      6.98  402.93  0.00023       35.0%     52.73
  WD 4:  Seg 13   159-197      9.04  488.00  1.6e-05       22.5%     56.47
  WD 5:  Seg 17   201-239      9.09  490.17  1.5e-05       25.0%     55.84
  WD 6:  Seg 21   243-281      7.76  435.14  8.5e-05       15.0%     53.09
  WD 7:  Seg 25   285-324      8.15  451.51  5.1e-05       27.5%     57.56
  WD 8:  Seg 29   336-374      6.68  390.75  0.00034       12.5%     32.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-67     LDSTKAAPRIRDTPEDI-VLEA-PASGLAFHPTRDLLAAGDVDGDVFVFA
   WD 2   75-113    -T--------KELWSSG-HHLK-SCRAVVFSEDGQKLVTVSKDKAIHILD
   WD 3  117-155    -G--------QLERRISKAHSA-PINSVLLV-DENALVTGDDTGGIRLWD
   WD 4  159-197    -E--------GPLMDMR-QHEE-YIADMALDPAKKLLLTASGDGCLGVFN
   WD 5  201-239    -R--------RFELLSE-PQSG-DLTSVALMKYGKKVACGSSEGTIYLFN
   WD 6  243-281    -F--------GATSDRF-ALRA-ESIDCIVPVTENLLCTGSTDGIIRAVN
   WD 7  285-324    -N--------RVVGTVG-QHAGEPVEALALSHCGHFLASSGHDQRLKFWD
   WD 8  336-374    -Y--------RRRKKKG-GPLR-ALSSKAWSTDDFFAGLREDEEDAKAPE

   WD40 Template    TG--------ECLRTLS-GHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD