Input parameters:
Query = ENSMUSP00000039134 (Len=1406)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000039134, Len=1406):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNSTNKPGIRTMPPINLQEKQVI 80
WD40-rpts
Query 81 CLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVR 160
WD40-rpts
Query 161 VISVSTSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF 240
WD40-rpts (_______________WD 1_______________)
Query 241 IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCLSEGALSPDGTVLATASHDGF 320
WD40-rpts (_________________WD 2____________
Query 321 VKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDI 400
WD40-rpts ____) (_________________________WD 3_________________________) (____________
Query 401 FSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA 480
WD40-rpts ____WD 4________________)
Query 481 EEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTAHEDFTFGESRPELGSEGLAS 560
WD40-rpts
Query 561 AAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMTPTASLQQISASPSSSSSSSSSSSSSSSSSSSSLTAVSAVS 640
WD40-rpts
Query 641 SSSAMDPSLPRPPEELTLSPKLQLDGSLTLNSSSSSLQASPRSLLPGLLPGPADKLISKGPGQVSTAASALSLDLQEVEP 720
WD40-rpts
Query 721 LGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASALHLLSPRPRQGPELGSQLGL 800
WD40-rpts
Query 801 DGGPGDGDRHSTPSLLEAALTQEVATPDSQVWPTAPDITRETCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDTS 880
WD40-rpts
Query 881 AEQSDHDDEVASLASASGGFGSKIPTPRLPSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVAEPPEDWPALIW 960
WD40-rpts
Query 961 QQQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQALSSAV 1040
WD40-rpts
Query 1041 AGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYR 1120
WD40-rpts
Query 1121 EAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSS 1200
WD40-rpts
Query 1201 VRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQG 1280
WD40-rpts
Query 1281 HLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITR 1360
WD40-rpts
Query 1361 DHMGSVMAQVRQKLFQFLQADPHNSLSKAARRLSLMLHGLVTPSLP 1406
WD40-rpts
4 WD40-repeats found in QUERY=ENSMUSP00000039134 (Len=1406):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 9 170-205 5.09 324.85 0.00261 27.5% 43.31
WD 2: Seg 16 287-325 7.14 409.51 0.00019 30.0% 51.25
WD 3: Seg 20 329-384 2.94 236.30 0.03996 20.0% 33.91
WD 4: Seg 23 388-425 3.52 260.22 0.01922 25.0% 26.26
Multiple sequence alignment of 4 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 170-205 T---------LLKGFTG-SVADLAFAHLNSPQ-----------LACLDEAGNLFVWR
WD 2 287-325 -KQ----GFIVVKGHST-CLSEGALS-PDGTV-----------LATASHDGFVKFWQ
WD 3 329-384 EGQDEPRCLHEWKPHDGRPLSCLLFC-DNHKKQDPEVPFWRFLITGADQNRELKMWC
WD 4 388-425 -WT----CLQTIRFSPD-IFSSVSVP-PSLKV-----------CLDLS-AEYLILSD
WD40 Template TGE----CLRTLSGHTS-GVTSVSFS-PDGKR-----------LVSGSEDGTIKVWD