Input parameters:

  Query = ENSMUSP00000040846 (Len=382)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040846, Len=382):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELVAGSYEQVLFGFTVQRGPAKSGHQETWTPVADFTHHSHTASLSVLASNSRYVVSGSKDETIHIYDMKRKVEHGALVH 80  
WD40-rpts                                   (_________________WD 1________________)   (________

Query       81 HAGTVTCLKFHGNQHLISGAEDGHICIWDVKRWKCLKTFKAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLIEGRSAFI 160 
WD40-rpts      ________WD 2________________)   (_________________WD 3________________)(________

Query      161 KNIKENAHIVEWSPSGGKYIVVVQNKVDVYRLGTASVSGTITNGKRISSVTFLSDSVLAVAGDEEVVRIFDCDSLECLCE 240 
WD40-rpts      _________WD 4_________________)(_________________WD 5_________________)   (_____

Query      241 FRAHENRVKDMVSFEVPDHHVLVTASNDGFIKMWTLPQDKKVPPSLLCEAKTGARLTCLTVWLDRAANGMASLPPAAEPC 320 
WD40-rpts      _____________WD 6_________________)                            (_______________W

Query      321 PDQPKTIEKESGDTVQEETSEPNSEKSDVSGDSKQPTKGNSPVTAKKRKMATMSEKKRKKKM 382 
WD40-rpts      D 7_______________)   (_________________WD 8_________________)

8 WD40-repeats found in QUERY=ENSMUSP00000040846 (Len=382):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    30-68       8.26  455.86  4.5e-05       22.5%     53.35
  WD 2:  Seg  7    72-109      8.09  448.96  5.5e-05       35.0%     54.87
  WD 3:  Seg 11   113-151     10.05  529.80  4.5e-06       35.0%     58.23
  WD 4:  Seg 15   152-191      6.04  364.01  0.00077       15.0%     55.98
  WD 5:  Seg 19   192-231      5.71  350.37  0.00118       17.5%     52.92
  WD 6:  Seg 23   235-275      8.42  462.28  3.7e-05       37.5%     56.80
  WD 7:  Seg 28   304-339      7.42  421.35  0.00013       15.0%     24.51
  WD 8:  Seg 29   343-382      3.13  243.75  0.03184       15.0%     26.68

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-68     -WT-PVADFTHHSHTAS--LSVL--ASNSRYVVSGSKDETIHIYD
   WD 2   72-109    -KV-EHGALVHHAGTVT--CLKF--HGNQ-HLISGAEDGHICIWD
   WD 3  113-151    -WK-CLKTFKAHRGHVT--FLSI--HPSGKLALSVGTDKTLRTWN
   WD 4  152-191    LIEGRSAFIKNIKENAH--IVEW--SPSGGKYIVVV-QNKVDVYR
   WD 5  192-231    LGTASVSGTITNGKRIS--SVTF--LSDSV-LAVAGDEEVVRIFD
   WD 6  235-275    -LE-CLCEFRAHENRVK--DMVSFEVPDHHVLVTASNDGFIKMWT
   WD 7  304-339    -----DRAANGMASLPP--AAEP--CPDQPKTIEKESGDTVQEET
   WD 8  343-382    -NS-EKSDVSGDSKQPTKGNSPV--TAKKRKMATMSEKKRKKKM-

   WD40 Template    TGE-CLRTLSGHTSGVT--SVSF--SPDGKRLVSGSEDGTIKVWD