Input parameters:

  Query = ENSMUSP00000040852 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040852, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEHLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGH 80  
WD40-rpts                                 (_________________WD 1_________________)   (_________

Query       81 SLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKT 160 
WD40-rpts      ________WD 2________________)   (_________________WD 3________________)   (_____

Query      161 LSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRG 240 
WD40-rpts      ____________WD 4________________)   (_________________WD 5_________________)   (

Query      241 RCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKT 320 
WD40-rpts      __________________WD 6__________________)   (__________________WD 7_____________

Query      321 IKVWSSDC 328 
WD40-rpts      ____)   

7 WD40-repeats found in QUERY=ENSMUSP00000040852 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    28-67       8.63  471.19  2.8e-05       37.5%     53.88
  WD 2:  Seg  5    71-109     11.10  573.35  1.2e-06       50.0%     57.35
  WD 3:  Seg  9   113-151     10.82  561.69  1.7e-06       42.5%     57.16
  WD 4:  Seg 13   155-193     11.08  572.34  1.2e-06       45.0%     55.96
  WD 5:  Seg 17   197-236      9.52  507.87  8.9e-06       45.0%     54.97
  WD 6:  Seg 21   240-281      7.91  441.52  7.0e-05       45.0%     55.75
  WD 7:  Seg 25   285-325      8.52  466.57  3.2e-05       37.5%     50.11

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-67     NYALRLTLAGHSAA-I--SSVKFSPNG-EWLASSA--ADALIIIWG
   WD 2   71-109    -GNCKKTLYGHSLE-I--SDVAWSSDS-SRLVSAS--DDKTLKVWD
   WD 3  113-151    -GKCLKTLKGHSDF-V--FCCDFNPPS-NLIVSGS--FDESVKIWE
   WD 4  155-193    -GKCLKTLSAHSDP-I--SAVNFNCNG-SLIVSGS--YDGLCRIWD
   WD 5  197-236    -GQCLRTLADEGNPPV--SFVKFSPNG-KYILTAT--LDNTLKLWD
   WD 6  240-281    -GRCLKTYTGHKNE-KYCLFASFSVTGRKWVVSGS--EDNMVYIWN
   WD 7  285-325    -KEIVQRLQGHTDV-V--ISAACHPTK-NIIASAALENDKTIKVWS

   WD40 Template    TGECLRTLSGHTSG-V--TSVSFSPDG-KRLVSGS--EDGTIKVWD