Input parameters:

  Query = ENSMUSP00000040938 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040938, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTFEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQ 80  
WD40-rpts                    (_______________WD 1_______________)(____________________WD 2_____

Query       81 RFLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKEDPVANMEPAQ 160 
WD40-rpts      _______________)           (________________WD 3________________)       (_______

Query      161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 
WD40-rpts      ____________WD 4___________________)  (__________________WD 5__________________)

Query      241 MRTQHPTKGFASVTEKAHKSTVWQVRHLPQNREIFLTTGGAGSLHLWKYEYPTQRSKKDSEGLEMGVAGSVSLLQNVTVS 320 
WD40-rpts              (_________________WD 6_________________)                   (____________

Query      321 TQPISSLDWSPDKRGLCVCSSFDQMVRVLIVTKLQTI 357 
WD40-rpts      _______WD 7__________________)       

7 WD40-repeats found in QUERY=ENSMUSP00000040938 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-50       4.98  320.54  0.00298       17.5%     36.49
  WD 2:  Seg  4    51-96       5.49  341.24  0.00157       17.5%     56.31
  WD 3:  Seg  9   108-145      7.41  420.70  0.00013       32.5%     32.21
  WD 4:  Seg 13   153-196      6.11  366.87  0.00071       12.5%     35.98
  WD 5:  Seg 16   199-240      7.01  404.09  0.00022       30.0%     53.40
  WD 6:  Seg 20   249-288      7.20  411.97  0.00017       22.5%     53.58
  WD 7:  Seg 25   308-350      7.73  434.09  8.8e-05       30.0%     54.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-50     -------------KGLN----YTVFDSKW---VPCS---AK-F-VTMGNFARGTGVIQVYE
   WD 2   51-96     IQ--RGDLKLLREIEKA----KPIKCGTFGAASLQQ---RF-L-AT----GDFGGNLHIWN
   WD 3  108-145    KG--H-----KEIINTI----DGVGGLGI---GEGA---PE-I-VT----GSRDGTVKVWD
   WD 4  153-196    VA--N---MEPAQGENKRDCWTVAFGNAY---NQEE---RV-V-CA----GYDNGDIKLFD
   WD 5  199-240    -N--M---SLRWETNIK----NGVCSLEF---DRKDISMNK-L-VA----TSLEGKFHVFD
   WD 6  249-288    -G--F---ASVTEKAHK----STVWQVRH---LPQN---REIF-LT----TGGAGSLHLWK
   WD 7  308-350    AGSVS---LLQNVTVST----QPISSLDW---SPDK---RG-LCVC----SSFDQMVRVLI

   WD40 Template    TG--E---CLRTLSGHT----SGVTSVSF---SPDG---KR-L-VS----GSEDGTIKVWD