Input parameters:

  Query = ENSMUSP00000041049 (Len=431)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000041049, Len=431):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPMEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQQGKNYICAWELQRKDQLQQKIMCP 80  
WD40-rpts                                 (_________________WD 1________________)   (__________

Query       81 GPVTCLTTAPNGLYVLAGIAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSR 160 
WD40-rpts      ______WD 2________________)   (_________________WD 3________________)           

Query      161 ILAPRHVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIF 240 
WD40-rpts           (________________WD 4_______________)   (________________WD 5______________

Query      241 QVDLCSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCLRTVTLKGPVTNAAIIL 320 
WD40-rpts      __)               (_________________WD 6________________)   (________________WD 

Query      321 APPSMLNPEFRPSLPLPHFNKHLLGAEHGDEAQGGGLRLQLGLHLQGKEPSYLERLEQLQAVLSSYLEKNMLGSQMLPAR 400 
WD40-rpts      7________________)                                                              

Query      401 VFDLEDEVRSLRKINRDLFDFSTRIITRPSK 431 
WD40-rpts                                     

7 WD40-repeats found in QUERY=ENSMUSP00000041049 (Len=431):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-66       8.43  462.90  3.6e-05       20.0%     53.69
  WD 2:  Seg  7    70-107      7.31  416.79  0.00015       20.0%     54.56
  WD 3:  Seg 11   111-149      9.63  512.46  7.7e-06       32.5%     55.06
  WD 4:  Seg 15   166-202      7.21  412.59  0.00017       27.5%     48.36
  WD 5:  Seg 18   206-243      7.65  430.51  9.8e-05       27.5%     56.18
  WD 6:  Seg 22   259-297      9.07  489.22  1.6e-05       37.5%     46.66
  WD 7:  Seg 25   301-338      6.47  381.82  0.00044       15.0%     42.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-66     GANLLTYRGGQAGPRGL--ALLNGEYLLAAQQGKNYICAWE
   WD 2   70-107    KDQLQQKIMCPGPVTCL--TTAPNGLYVLAGI-AESIYLWE
   WD 3  111-149    GNLLVILSRHYQDVSCL--KFTGDGSHFVSAGKDCLALAWS
   WD 4  166-202    ----HVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWA
   WD 5  206-243    GDLLLSVLFD-MGITSV--TMDLAEHHIFCGGSDGSIFQVD
   WD 6  259-297    QNTGKVFKGHRNQVTCL--SVSTDGSVLLSGSHDESVRLWD
   WD 7  301-338    KQCLRTVTLK-GPVTNA--AIILAPPSMLNPEFRPSLPLPH

   WD40 Template    GECLRTLSGHTSGVTSV--SFSPDGKRLVSGSEDGTIKVWD