Input parameters:

  Query = ENSMUSP00000041750 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000041750, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWRQLCLRRWASCKAFPVVVGTQTWKKYYFCRSELEFRME 80  
WD40-rpts                                                                                      

Query       81 SGRPQDFICKAISGHTGMIDQLAYVSPHEYRFDEGARSVVCTVSSDCTVRAWDLQEGSEIWSSAVQPAPLVNVVAYPQLQ 160 
WD40-rpts           (_____________________WD 1_____________________)   (_________________WD 2__

Query      161 LVVTVDIQGLIMGWKAKTGSEWAFFSLPASCSSMEACDHPEGPFLLVACDEGTLYTMTVPQLQVVSRVPTFPHSSVSLTC 240 
WD40-rpts      ______________)   (_________________WD 3_________________)   (_________________W

Query      241 SPDTQWVFVSAQGSDLGPKVFYTQPLLHPSEDRLPVSTTLPIRLSSRACWAPDEAARLMVIHRDDGGVHLVITTFELKAT 320 
WD40-rpts      D 4________________)           (__________________WD 5_________________)      (_

Query      321 KSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRSELVLFTIHGLQLMAFQDHQRPITSMWVDPDRVITAALDL 400 
WD40-rpts      ________________WD 6_________________)           (_________________WD 7_________

Query      401 SLRVYVWNKKNTSPVLKSCYHLLGGSHRWASGFTHVKSDSRSIAGVEARSTGTSILRSYCFKVKLD 466 
WD40-rpts      _______)(_________________WD 8_________________)                  

8 WD40-repeats found in QUERY=ENSMUSP00000041750 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    86-133      6.09  366.23  0.00072       22.5%     40.45
  WD 2:  Seg  6   137-175      8.14  450.94  5.2e-05       17.5%     50.46
  WD 3:  Seg 10   179-218      6.71  392.03  0.00032       20.0%     54.27
  WD 4:  Seg 14   222-260      7.71  433.22  9.0e-05       10.0%     54.84
  WD 5:  Seg 19   272-312      4.55  302.69  0.00518       12.5%     43.85
  WD 6:  Seg 23   319-358      7.24  413.87  0.00016        7.5%     39.64
  WD 7:  Seg 27   370-408      6.65  389.48  0.00035       22.5%     38.50
  WD 8:  Seg 31   409-448      5.22  330.17  0.00221       10.0%      9.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   86-133    -DFICKAISGHTG-MIDQLAYVSP--HEYRFDEGARSVVCTVSSDCTVRAWD
   WD 2  137-175    -GSEIWSSAVQPA-PLVNVVAYPQ--LQL---------VVTVDIQGLIMGWK
   WD 3  179-218    -GSEWAFFSLPASCSSMEACDHPE--GPF---------LLVACDEGTLYTMT
   WD 4  222-260    -LQVVSRVPTFPH-SSVSLTCSPD--TQW---------VFVSAQGSDLGPKV
   WD 5  272-312    -DRLPVSTTLPIR-LSSRACWAPDEAARL---------MVIHRDDGGVHLVI
   WD 6  319-358    ATKSRDRLSILAQ-QLASFHLPDT--MTP---------HLMQGHGSQTILLT
   WD 7  370-408    -GLQLMAFQDHQR-PITSMWVDPD--RVI---------TAALDLSLRVYVWN
   WD 8  409-448    KKNTSPVLKSCYH-LLGGSHRWAS--GFT---------HVKSDSRSIAGVEA

   WD40 Template    TGECLRTLSGHTS-GVTSVSFSPD--GKR---------LVSGSEDGTIKVWD