WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000041830 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000041830 (Len=2891) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000041830, Len=2891): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHLHQVLTGAVNPGDNCYSVGSVGDVPFTAYGSGCDIVILASDFECVQIIPGAKHGNIQVSCVECSNQHGRVAASYGNAV 80
WD40-rpts
Query 81 CIFEPLGVNSHKRNSQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGGDILEEEEDVDNRAPPVLNDW 160
WD40-rpts (_____________________
Query 161 KCIWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSW 240
WD40-rpts ______WD 1___________________________)
Query 241 RKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRK 320
WD40-rpts
Query 321 GQRRSSVLVTHAELMPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHF 400
WD40-rpts
Query 401 TSSTEIFMHQLRKLSEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRP 480
WD40-rpts
Query 481 SISMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSK 560
WD40-rpts
Query 561 NIMMYACVNATKDSYNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVS 640
WD40-rpts
Query 641 HKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAI 720
WD40-rpts
Query 721 YSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARK 800
WD40-rpts
Query 801 LLDELSDPEASKLIGEVFNIVSQQSTARPGCIIELDAITDQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKEKESEIFFQP 880
WD40-rpts
Query 881 SQGYRPPPFSEKFFLVVIEKDGNNNSILHMWHLHLKSVQACLAKAAEGISSDSLLSVPGQKNLDSSPETSSSMSSVPHSS 960
WD40-rpts
Query 961 SIANLQTASKLILSSRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMETNSLGNT 1040
WD40-rpts (_______________WD 2_______________)
Query 1041 SDESETYHWRRWPLMNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFISKEFSMHVCIFECESTGGSEWVL 1120
WD40-rpts
Query 1121 EQTIHLDDLVKVGSVLDSRVSVDSNLFVYSKSDAFLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRLSG 1200
WD40-rpts
Query 1201 IVSDQTNSKDGVAVITLPLGGSIKQGVKSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKHSVK 1280
WD40-rpts
Query 1281 FGNVDADSPVEETIQDHSALKSSMLARKSIVEGAAIPDDVFCSPTVVQDGGLFEAAHALSPTLPQYHPTQLLELMDLGKV 1360
WD40-rpts
Query 1361 RRAKAILSHLVKCIAGEVAIVRDPDAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLHALLAADQDT 1440
WD40-rpts
Query 1441 SYRISEDSTKKPQSYEDHIESQSEDQYSELFQVQEITTDDIDLEPEKRENKSKVINLSQYGPACFGQEHARVLSSHLMHS 1520
WD40-rpts
Query 1521 SLPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTCHF 1600
WD40-rpts
Query 1601 AWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNVNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWG 1680
WD40-rpts
Query 1681 LFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLFESE 1760
WD40-rpts
Query 1761 FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTLLEQTPKEDDEQQVIIKSCNPVVFSFY 1840
WD40-rpts
Query 1841 NYLRTHPLLIRRNLASPEGTLATLGLKTEKNIADKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKISSLTAKK 1920
WD40-rpts
Query 1921 DQLDSVSGRMENGPSESKPVSRSDGGSGADWSAVTSSQFDWSQPMVTVDEEPLRLDWGDDHDGALEEDDGGGLVMKTTDA 2000
WD40-rpts
Query 2001 KKAGQEQSASDPRALLTPQDEECADGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAALH 2080
WD40-rpts
Query 2081 EICNHESVIKEYSSKAHSTVETERLDQEEMVDKPDIGSYERHQIERRRLQAKREHAERRKLWLQKNQDLLRVFLSYCSLH 2160
WD40-rpts
Query 2161 GAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTPPH 2240
WD40-rpts
Query 2241 PSVEDVKVHTLHSLAASLSASIYQALCDSHSYSQSEGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSAPAQWPGVSSL 2320
WD40-rpts
Query 2321 INLLSSAQDEDQPKLNVLLCEAVVAVYLSLLIHALATNSSNELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSESIAAP 2400
WD40-rpts
Query 2401 PVASEDMDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKEKFIPPELSMWDYFVAKPFLPLSDSGVIYDSDESVHSDD 2480
WD40-rpts
Query 2481 EEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNIKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKMDHF 2560
WD40-rpts
Query 2561 EGPPPNYVNTYPTDLSVGAGPAILRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSEVEA 2640
WD40-rpts
Query 2641 DLGYPGGKAKVIHKESDMIMAFSINKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDIDYRGSTTTL 2720
WD40-rpts
Query 2721 YQPGAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQA 2800
WD40-rpts (______________________________WD 3______________________________)(____________
Query 2801 GNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWDT 2880
WD40-rpts _______WD 4__________________)
Query 2881 LISPGNSLIHG 2891
WD40-rpts
 4 WD40-repeats found in QUERY=ENSMUSP00000041830 (Len=2891): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 139-198 3.67 266.27 0.01595 30.0% 31.77 WD 2: Seg 42 994-1029 3.08 241.82 0.03377 15.0% 20.67 WD 3: Seg 72 2722-2787 2.92 235.15 0.04139 12.5% 41.70 WD 4: Seg 75 2788-2830 4.53 301.65 0.00535 15.0% 55.05Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 139-198 GG---DILE--------------------------EEEDVDNRAPPVLNDWKCIWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWY WD 2 994-1029 -------AT--------------------------PSAG-------------------HLSSSSIYPVCLAPYLVVT-TCSDNKVRFWK WD 3 2722-2787 QP---GAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKR-------------------NLHNVKRMTSHPVHQYYLT-GAQDGSVRMFE WD 4 2788-2830 WTRPQQLVC--------------------------FRQA-------------------GNARVTRLYFNSQGNKCGV-ADGEGFLSIWQ WD40 Template TG---ECLR--------------------------TLSG-------------------HTSGVTSVSFSPDGKRLVS-GSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |