Input parameters:

  Query = ENSMUSP00000041880 (Len=876)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000041880, Len=876):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKGQPSLREAISM 80  
WD40-rpts                                                                                      

Query       81 SCITNGSGISRKQNHTSSVSIARKETLSSAAKRHKDVIVNQEGEYIKMFMRGRPITMFIPSDVDNYDDIRTELPPEKLKL 160 
WD40-rpts                                             (___________________WD 1_________________

Query      161 EWVYGYRGKDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYLGHTDCVRCLAVHPDKIRIATGQIAGVDKDGRPLQP 240 
WD40-rpts      _)                                 (_______________________WD 2_________________

Query      241 HVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLCVIDDSNEHMLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTD 320 
WD40-rpts      _____)(_____________________WD 3_____________________)   (_________________WD 4_

Query      321 ANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPKFVQCLAFLGNGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQI 400 
WD40-rpts      _______________)(____________________WD 5____________________)               (__

Query      401 NRQIKAHDGSVFTLCQMRNGMLLTGGGKDRKIILWDHDLNLEREIEVPDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFN 480 
WD40-rpts      _______________WD 6________________)(___________________WD 7__________________)(

Query      481 DGFQIEVQGHTDELWGLATHPFKDLLLTCAQDRQVCMWNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLD 560 
WD40-rpts      _________________WD 8_________________)(__________________WD 9_________________)

Query      561 AETRDLVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVLENGRKYSRYGKCTGHSSYITHLDWSPDNKHIMSNSG 640 
WD40-rpts         (_________________WD10________________)       (_________________WD11_________

Query      641 DYEILYWDIENGCKLIRNRSDCKDIDWTTYTCVLGFQVFGVWPEGSDGTDINALVRSHNRRVIAVADDFCKVHLFQYPCS 720 
WD40-rpts      _______)                          (__________________WD12__________________)    

Query      721 KAKAPSHKYSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLPVPQNEVITDASVTKTPASSSETARPSNSPPLP 800 
WD40-rpts        (_________________WD13_________________)                                      

Query      801 PSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQSEWGSEDLGVVIDEEPASELSETQGATELPEEERGITPLC 876 
WD40-rpts                                                                                  

13 WD40-repeats found in QUERY=ENSMUSP00000041880 (Len=876):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   120-162      2.96  236.88  0.03927       10.0%     17.68
  WD 2:  Seg  8   196-246      6.85  397.74  0.00027       35.0%     54.11
  WD 3:  Seg 12   247-294      5.87  357.03  0.00096       22.5%     43.38
  WD 4:  Seg 16   298-336      7.26  414.47  0.00016       15.0%     56.63
  WD 5:  Seg 20   337-382      5.21  329.91  0.00223       17.5%     45.85
  WD 6:  Seg 24   398-436      7.62  429.50  0.00010       25.0%     51.61
  WD 7:  Seg 28   437-479      5.42  338.51  0.00171       12.5%     53.65
  WD 8:  Seg 32   480-519      8.86  480.47  2.1e-05       17.5%     56.48
  WD 9:  Seg 36   520-560      6.72  392.36  0.00032       22.5%     57.90
  WD10:  Seg 40   564-602      7.85  439.07  7.5e-05       20.0%     57.91
  WD11:  Seg 44   610-648      8.62  470.83  2.8e-05       35.0%     53.62
  WD12:  Seg 50   675-716      5.69  349.90  0.00120        2.5%     52.16
  WD13:  Seg 54   723-762      6.60  387.42  0.00037       32.5%     47.57

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  120-162    NQ-------EGEYI----KMF--MRGRPITMFIPSDVD-NYDDI----RTELPPEK----------LKLEW
   WD 2  196-246    YE-------E--RT----QRH--YLGHTDCVRCLAVHP-DKIRI----ATGQIAGVDKDGRPLQPHVRVWD
   WD 3  247-294    SV-------S---LTTLHVIG--LGTFERGVGCLDFSK-ADSGVHLCVIDDSNEHM----------LTVWD
   WD 4  298-336    -K-------S---K----IAE--IKTTNEVVLAVEFHP-TDANT----IITCGKSH----------IFFWT
   WD 5  337-382    WSGNSLTRKQ---G----IFG--KYEKPKFVQCLAFLG-NGDVL----TGDS-GGV----------MLIWS
   WD 6  398-436    -Y-------Q---I----NRQ--IKAHDGSVFTLCQMR-NGMLL----TGGGKDRK----------IILWD
   WD 7  437-479    HD----LNLE---R----EIE--VPDQYGTIRAVAEGR-AEQFL----VGTSRNFI----------LRGTF
   WD 8  480-519    ND-------G---F----QIE--VQGHTDELWGLATHP-FKDLL----LTCAQDRQ----------VCMWN
   WD 9  520-560    SV-------E--HR----LEW--TRLVDEPGHCADFHP-SGTVV----AIGTHSGR----------WFVLD
   WD10  564-602    -R-------D---L----VSI--HTDGNEQLSVMRYSV-DGTLL----AVGSHDNF----------IYLYT
   WD11  610-648    -Y-------S---R----YGK--CTGHSSYITHLDWSP-DNKHI----MSNSGDYE----------ILYWD
   WD12  675-716    GF-------Q---V----FGVWPEGSDGTDINALVRSH-NRRVI----AVADDFCK----------VHLFQ
   WD13  723-762    -K-------A---P----SHK--YSAHSSHVTNVSFTHNDSHLI----STGGKDMS----------IIQWK

   WD40 Template    TG-------E---C----LRT--LSGHTSGVTSVSFSP-DGKRL----VSGSEDGT----------IKVWD