Input parameters:

  Query = ENSMUSP00000042664 (Len=242)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000042664, Len=242):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRWLIGGGREPQGLAEKAALQTIGEDQGQNPYTELLVLEAHRDIVRFLVRLDDFRFASAGDDGIIVVWNAQTGEKLLEL 80  
WD40-rpts                                      (________________WD 1________________)   (______

Query       81 RGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGIWDCDTGRQIQRVTCFQSTVKCLTVLQRLDIWLSGGSDLGVWNR 160 
WD40-rpts      ______________WD 2____________________)   (________________WD 3_______________) 

Query      161 KLDLLCKTSHLSDTGISALVEIPGNCVAAAVGRELIIFRLVTPTEELPEWDIIEVKRLLDHQDNILSLANINGSVLTMGS 240 
WD40-rpts        (_________________WD 4________________)                                       

Query      241 VL 242 
WD40-rpts        

4 WD40-repeats found in QUERY=ENSMUSP00000042664 (Len=242):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-70       7.16  410.41  0.00018       30.0%     52.93
  WD 2:  Seg  7    74-119      8.83  479.40  2.2e-05       40.0%     56.39
  WD 3:  Seg 11   123-159      7.20  412.26  0.00017       20.0%     51.82
  WD 4:  Seg 15   163-201      7.85  439.09  7.5e-05       10.0%     47.58

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-70     YTELLVLEAHRDIVRFLVR-L-------DDFRFASAGDDGIIVVWN
   WD 2   74-119    GEKLLELRGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGIWD
   WD 3  123-159    GRQIQRVTCFQSTVKCLTVLQ-------RLDIWLSGGSD--LGVWN
   WD 4  163-201    DLLCKTSHLSDTGISALVEIP-------GNCVAAAVGRELIIFRLV

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-------DGKRLVSGSEDGTIKVWD