Input parameters:

  Query = ENSMUSP00000043433 (Len=767)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000043433, Len=767):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPTPLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMAAPHQCPQGGTSYPHWPR 80  
WD40-rpts                                                                                      

Query       81 LSPLQYYEMSYGLNIEMHKQAEIVKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQVTVGELNSLLGQQNQLQPLSHAPPV 160 
WD40-rpts                                                                                      

Query      161 PLTPRPAGLVGAGATGLLALSGALAAQAQLVAAVKEDRVGVDAEGSRVDRAASRSSSPSPPESLVEEDHPSSRGGSGKQQ 240 
WD40-rpts                                                                                      

Query      241 RAEDKDLSGPYDSEEDKSDYNLVVDEDQPSEPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDIALNDLP 320 
WD40-rpts                                                                                      

Query      321 TGTPASRSCGTSPPQDSSTPGPSSASHLCQLAAQPAAPTDSIALRSPLTLSSPFTSSFSLGSHSTLNGDLSMPGSYVGLH 400 
WD40-rpts                                                                                      

Query      401 LSPQVSSSVVYGRSPLQMAFESHPHLRGSSVSLPGIPVAKPAYSFHVSADGQMQPVPFPSDALVGTGIPRHARQLHTLAH 480 
WD40-rpts                                                                       (______________

Query      481 GEVVCAVTISSSTQHVYTGGKGCVKVWDVGQPGSKTPVAQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPT 560 
WD40-rpts      _____WD 1__________________)           (_______________WD 2_______________)     

Query      561 PRIKAELTSSAPACYALAVSPDAKVCFSCCSDGNIVVWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGLDNTVRCW 640 
WD40-rpts      (_________________WD 3________________)   (_________________WD 4________________

Query      641 DLREGRQLQQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLHVRKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLN 720 
WD40-rpts      )(__________________WD 5_________________)(__________________WD 6_______________

Query      721 AWRTPYGASIFQSKESSSVLSCDISRNNKYIVTGSGDKKATVYEVVY 767 
WD40-rpts      __)(__________________WD 7_________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000043433 (Len=767):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   466-508      6.42  380.04  0.00047       30.0%     44.29
  WD 2:  Seg 12   520-555      7.84  438.61  7.6e-05       30.0%     45.40
  WD 3:  Seg 15   561-599      8.32  458.39  4.1e-05       30.0%     55.83
  WD 4:  Seg 19   603-641      9.71  515.87  6.9e-06       35.0%     53.46
  WD 5:  Seg 23   642-682      6.23  371.81  0.00061       20.0%     53.10
  WD 6:  Seg 27   683-723      8.10  449.22  5.5e-05       27.5%     53.99
  WD 7:  Seg 31   724-764      7.43  421.74  0.00013       30.0%     53.71

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  466-508    TGI-PRHARQLHTL-AHGEVVCAVTISSSTQHVYTGG-KGCVKVWD
   WD 2  520-555    QLD-CL---------NRDNYIRSCKLLPDGQSLIVGGEASTLSIWD
   WD 3  561-599    -PR-IKAE----LT-SSAPACYALAVSPDAKVCFSCCSDGNIVVWD
   WD 4  603-641    -QA-MVRQ----FQ-GHTDGASCIDISDYGTRLWTGGLDNTVRCWD
   WD 5  642-682    LRE-GRQL----QQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLH
   WD 6  683-723    VRKPEKYQ----LR-LHESCVLSLKFASCGRWFVSTGKDNLLNAWR
   WD 7  724-764    TPYGASIF----QS-KESSSVLSCDISRNNKYIVTGSGDKKATVYE

   WD40 Template    TGE-CLRT----LS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD