Input parameters:

  Query = ENSMUSP00000043671 (Len=993)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000043671, Len=993):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAARWSSENVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAAS 80  
WD40-rpts          (_________________WD 1________________)     (__________________WD 2_________

Query       81 SNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKN 160 
WD40-rpts      ________)     (_________________WD 3_________________)   (_________________WD 4_

Query      161 ANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKA 240 
WD40-rpts      _______________)    (_________________WD 5_________________)   (________________

Query      241 RYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVGHDDVVLEFQWRRQKEGSKDYQLVTWSRDQTLRMWRVDYQM 320 
WD40-rpts      ___WD 6___________________)    (___________________WD 7___________________)(____

Query      321 QRLCANDILDGVDEFIESISLLPEPEKTPHPQDIDHQPSLSHGEEDAIKEDPPSSLLEEKRSDQLGLPQTLQQEFSLINV 400 
WD40-rpts      _________________WD 8____________________)                                      

Query      401 QIRNVNVEMDAADRSCTVSVHCSNHRVKMLVTFPAQYPNNAAPSFQFINPTTITSAVKAKLLKILKDTSLQKVKRNQSCL 480 
WD40-rpts                                                                                      

Query      481 EPCLRQLVSCLESFVNQEDSASSNPFALQNSVTPPLPTFARVTTAYGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTMH 560 
WD40-rpts                                                                                      

Query      561 RAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERMSPRSARRRWSIQAINDF 640 
WD40-rpts                                                                                      

Query      641 PKSRRWKSKREGSDSGNRPIKAAGKVIIQDVSCLLPVHKSLGELYILNVNDTQETCQKNATSAMLVGRKDLVQVWSLATV 720 
WD40-rpts                                                                                      

Query      721 ATDLCLGPKSDPDLETPWARHPFGRQLLESLLAHYCQLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRSSNLVVSHSR 800 
WD40-rpts                                                                                      

Query      801 YPSFTSSGSCSSMSDPGFNTGGWNIAGRETEHISSPWGESSPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDD 880 
WD40-rpts                                                                                      

Query      881 FKKCYGEILYRWGLREKRAEVLKFVSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTC 960 
WD40-rpts                                                                                      

Query      961 GHGGHTSHMMEWFRTQEVCPTGCGCHCLLESTF 993 
WD40-rpts                                       

8 WD40-repeats found in QUERY=ENSMUSP00000043671 (Len=993):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       3.48  258.38  0.02034       12.5%     49.11
  WD 2:  Seg  5    49-89       2.95  236.54  0.03967        7.5%     49.61
  WD 3:  Seg  9    95-134      7.21  412.46  0.00017       35.0%     52.40
  WD 4:  Seg 13   138-176      6.73  392.62  0.00032       17.5%     52.13
  WD 5:  Seg 17   181-220      7.07  406.63  0.00021       25.0%     50.15
  WD 6:  Seg 21   224-267      4.22  288.84  0.00795       12.5%     51.61
  WD 7:  Seg 25   272-315      6.14  368.13  0.00068       25.0%     53.53
  WD 8:  Seg 29   316-362      3.29  250.67  0.02577       15.0%     24.10

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-43     WSSENV------VVEFRDSQATAMSVDC-LGQ-----H-AVLS-----G--RRFLYIVN
   WD 2   49-89     -EGHRK------ISRQSKWDIGAVQWNP-HDS---FAH-YFAA-----SS-NQRVDLYK
   WD 3   95-134    -GEVGT------TLQGHTRVISDLDWAVFEPD-----L-LVTS-----SV-DTYIYIWD
   WD 4  138-176    -TRKPT------VALSAVAGASQVKWNK-KNA-----N-YLAT-----SH-DGDVRIWD
   WD 5  181-220    -STAVE------YLAAHLSKIHGLDWHP-DSE-----HIFATS-----SQ-DNSVKFWD
   WD 6  224-267    -PRKYL------NILPCQVPVWKARYTP-FSN-----G-LVTVMVPQLRR-ENSLLLWN
   WD 7  272-315    -NAPVH------TFVGHDDVVLEFQWRR-QKEGSKDYQ-LVTW-----SR-DQTLRMWR
   WD 8  316-362    VDYQMQRLCANDILDGVDEFIESISLLP-EPE-----K-TPHP-----QDIDHQPSLSH

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSP-DGK-----R-LVSG-----SE-DGTIKVWD