Input parameters:

  Query = ENSMUSP00000043834 (Len=303)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000043834, Len=303):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWAPMNIRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDG 80  
WD40-rpts                    (_________________WD 1_________________)   (_________________WD 2_

Query       81 RLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDF 160 
WD40-rpts      _______________)   (_________________WD 3________________)   (_________________W

Query      161 SPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGLLASGSWDKTICVWKPTTNNLPLQLKGHTIW 240 
WD40-rpts      D 4________________)         (_______________WD 5______________)   (____________

Query      241 VNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPDGKLLVSGAAVTR 303 
WD40-rpts      _____WD 6________________)   (______________WD 7______________)

7 WD40-repeats found in QUERY=ENSMUSP00000043834 (Len=303):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-54       9.32  499.62  1.1e-05       35.0%     55.30
  WD 2:  Seg  5    58-96      10.76  559.08  1.8e-06       45.0%     57.83
  WD 3:  Seg  9   100-138     10.74  558.40  1.8e-06       47.5%     56.93
  WD 4:  Seg 13   142-180     10.33  541.37  3.1e-06       37.5%     56.45
  WD 5:  Seg 18   190-224      7.96  443.44  6.6e-05       37.5%     39.91
  WD 6:  Seg 21   228-266     10.26  538.52  3.4e-06       42.5%     56.12
  WD 7:  Seg 24   270-303      5.77  352.93  0.00109       37.5%     46.16

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-54     AVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWG
   WD 2   58-96     -GRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWD
   WD 3  100-138    -SKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE
   WD 4  142-180    -GRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWD
   WD 5  190-224    ----YHNLEGHTGNISCLCYSASG-LLASGSWDKTICVWK
   WD 6  228-266    -NNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWD
   WD 7  270-303    -GKCLETLKGMLDVAHACIFTPDGKLLVSGAAVTR-----

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD