Input parameters:

  Query = ENSMUSP00000044208 (Len=700)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044208, Len=700):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 PNKHVPKQSISVTRGARRRDEDSGTDVGEGTDEWSQSKATVRPPDQLELTDAELKEEFTRILTANNPHAPQNIVRYSFKE 80  
WD40-rpts                                                                                      

Query       81 GTYKLIGFVNQMAVHFSQVGNLIPKDSDEGRRQHYRDEMVAGSQESIKVVTSEAENLEEEEEPKEGEGEAEAEAEAGSQT 160 
WD40-rpts                                                                                      

Query      161 DIPAAAETTEKVIEEELMAPVQPKERKLTNQFNFSERASQTFNNPLRDRECQMEPPPRTNFSATANQWEIYDAYVDELEK 240 
WD40-rpts                                                                                      

Query      241 QEKTKEKEKAKTPVAKKTEKMAMRKLTSMESQSDDITKVTQAAKIVERMVNQNTYDDVAQDFKYYEDTADEYRDQEGTLL 320 
WD40-rpts                                                                                      

Query      321 PLWKFQNDKAKRLAVTALCWNPKYKDLFAVGHGSYDFMKQSRGMLLLYSMKNPSFPEYMFSSESGIMCLDVHVDHPYLVV 400 
WD40-rpts                                                          (_________________WD 1______

Query      401 VGYYDGNVAIYNLKKPHSQPCFRSTSKSGKHTDPVWQVKWQKDDMDHNLNFFSVSSDGRIVSWTLVKSELVHIDIIKLKT 480 
WD40-rpts      ___________)           (__________________WD 2_________________)                

Query      481 EGSTTEIPEGLQLHTVGCGTAFDFHKEIDYMFLVGTEEGKIYKCSKSYSSQFLDTYDAHNMAVDAVLWNPYHTKVFMSCS 560 
WD40-rpts                                                       (_________________WD 3_________

Query      561 SDWTVKIWDHTIKTPMFIYDLNSAVGDVAWAPYSSTVFAAVTTDGKAHVFDLAVNKYEAICNQPVVAKKKNKITHVQFNP 640 
WD40-rpts      ________)(__________________WD 4__________________)                             

Query      641 IHPIIIVGDDRGHIICLKLSPNLRKMPKEKKGQEVQKGPAVEIAKLDKLLNLVREVKTKT 700 
WD40-rpts                                                                  

4 WD40-repeats found in QUERY=ENSMUSP00000044208 (Len=700):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   373-412      3.48  258.59  0.02020       17.5%     50.47
  WD 2:  Seg 13   424-464      4.13  285.27  0.00888       27.5%     42.23
  WD 3:  Seg 20   530-569      5.83  355.42  0.00101       35.0%     43.31
  WD 4:  Seg 23   570-611      3.19  246.44  0.02933       20.0%     45.37

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  373-412    -PSFPEYMF-SSESGIMCLDVHV-DHPY----LV-VVGYYDGNVAIYN
   WD 2  424-464    STS---KSG-KHTDPVWQVKWQK-D-DMDHNLNF-FSVSSDGRIVSWT
   WD 3  530-569    -SQFLDTYD-AHNMAVDAVLWNPYH-TK----VF-MSCSSDWTVKIWD
   WD 4  570-611    HTIKTPMFIYDLNSAVGDVAWAP-Y-SS----TVFAAVTTDGKAHVFD

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSP-D-GK----RL-VSGSEDGTIKVWD