Input parameters:

  Query = ENSMUSP00000044305 (Len=579)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044305, Len=579):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAAIAALAASYGSGSGSESDSDSEGSRCPLPAADSLMHLTKSPSAKLSLTVAVDSAPEVAVKEDLETGVHLDPAVKEVQ 80  
WD40-rpts                                                                                      

Query       81 YNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAE 160 
WD40-rpts                                                                                      

Query      161 KNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI 240 
WD40-rpts                                                                       (______________

Query      241 LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYG 320 
WD40-rpts      ____WD 1__________________)          (_________________WD 2_________________)   

Query      321 DRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKI 400 
WD40-rpts       (_________________WD 3________________)   (__________________WD 4______________

Query      401 VQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS 480 
WD40-rpts      ___)   (_________________WD 5________________)(___________________WD 6__________

Query      481 MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHP 560 
WD40-rpts      ________)(_____________________WD 7____________________)   (_________________WD 

Query      561 HETSKVITCGWDGLIKLWD 579 
WD40-rpts      8_________________)

8 WD40-repeats found in QUERY=ENSMUSP00000044305 (Len=579):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   226-267      6.04  364.27  0.00077       12.5%     29.98
  WD 2:  Seg  6   278-317      8.04  446.78  5.9e-05       40.0%     52.09
  WD 3:  Seg 10   322-360      9.54  508.58  8.7e-06       35.0%     54.58
  WD 4:  Seg 14   364-404      5.95  360.50  0.00086       30.0%     48.82
  WD 5:  Seg 18   408-446      9.19  494.29  1.4e-05       30.0%     56.44
  WD 6:  Seg 22   447-489      6.69  391.06  0.00033       22.5%     52.20
  WD 7:  Seg 26   490-536      7.18  411.06  0.00018       30.0%     50.24
  WD 8:  Seg 30   540-579      6.79  395.00  0.00030       20.0%     52.07

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  226-267    KG-----KQEEEKPGEEKT--ILHVKEMYDY-QGRS---YLHIPQDVGVNLRS
   WD 2  278-317    -K-----KQIHVWSGHTKG--VSAVR--LFPLSGHL---LLSCSMDCKIKLWE
   WD 3  322-360    -R-----RCLRTFIGHSKA--VRDIC--FNT-AGTQ---FLSAAYDRYLKLWD
   WD 4  364-404    -G-----QCISRFTNRKV---PYCVK--FNP-DEDKQNLFVAGMSDKKIVQWD
   WD 5  408-446    -G-----EIVQEYDRHLGA--VNTIV--FVD-ENRR---FVSTSDDKSLRVWE
   WD 6  447-489    WD--IPVDFKYIAEPSMHS--MPAVT--LSP-NGKW---LACQSMDNQILIFG
   WD 7  490-536    AQNRFRLNKKKIFKGHMVAGYACQVD--FSP-DMSY---VISGDGNGKLNIWD
   WD 8  540-579    -T-----KLYSRFKAHDKV--CIGAV--WHPHETSK---VITCGWDGLIKLWD

   WD40 Template    TG-----ECLRTLSGHTSG--VTSVS--FSP-DGKR---LVSGSEDGTIKVWD