Input parameters:

  Query = ENSMUSP00000044329 (Len=419)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044329, Len=419):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVIRELNNNWQSHAFDGYEVNWTEQQQTVSCLHTLVYPLAQGQGLHVTGISWNSTGSVLACAYGRLDDGDWSTLKSYVCT 80  
WD40-rpts                                          (____________________WD 1___________________

Query       81 WNLDRQGLNPQQPSVVVEVPSAVMCLAFHPTQPSHIAGGLYSGEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLWLPE 160 
WD40-rpts      _)(_____________________WD 2____________________)           (__________________W

Query      161 PRHSHRFQVLSAATDGKVLLWRGSGAGQLRLTKGFALAVQQLPRSTKLKKPPRGETEVGVTSVAFSSFDSSLFVLGTEGG 240 
WD40-rpts      D 3__________________)   (_________________WD 4________________)                

Query      241 FPLKCSLASEVAALTRMPSSVPLRAPVQFTFSPHGGPVYSVSCSPFHRNLFLSAGTDGHVHLYSMLQAQPLTSLQLSHKY 320 
WD40-rpts                              (_________________WD 5_________________)   (____________

Query      321 LFAVRWSPVRPLVFAAASGEGDVQLFDLQKSSQKPTVSITQTQDGSPVYCLEFNSQQTQLLAAGDAKGMVKVWQLSTAFT 400 
WD40-rpts      _____WD 6_________________)(_____________________WD 7____________________)      

Query      401 EQGPREVEDLDQLEAEITT 419 
WD40-rpts                         

7 WD40-repeats found in QUERY=ENSMUSP00000044329 (Len=419):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    37-82       3.38  254.08  0.02320       17.5%     38.59
  WD 2:  Seg  5    83-129      4.21  288.77  0.00797       22.5%     49.47
  WD 3:  Seg 10   141-182      5.79  354.01  0.00105       30.0%     42.68
  WD 4:  Seg 13   186-224      3.93  277.19  0.01139       17.5%     13.75
  WD 5:  Seg 19   265-304      5.80  354.22  0.00105       30.0%     53.71
  WD 6:  Seg 23   308-347      5.14  326.81  0.00245       20.0%     55.17
  WD 7:  Seg 27   348-394      4.47  299.49  0.00572       25.0%     58.03

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-82     ----------------YPLAQGQGLHVTGISWNS-TGS-----VLACAYGRLDDGDWSTLKSYVCTWN
   WD 2   83-129    LDRQGLNPQ------QPSVVVEVPSAVMCLAFHPTQPS-----HIAGGLY----------SGEVLVWD
   WD 3  141-182    TG---------------LTDDTHTDPVYQVLWLP-EPRHSHRFQVLSAAT----------DGKVLLWR
   WD 4  186-224    -A------G------QLRLTKGFALAVQQLPRST-KLK-----KPPRGET----------EVGVTSVA
   WD 5  265-304    -A------P------VQFTFSPHGGPVYSVSCSPFHRN-----LFLSAGT----------DGHVHLYS
   WD 6  308-347    -A------Q------PLTSLQLSHKYLFAVRWSPVRPL-----VFAAASG----------EGDVQLFD
   WD 7  348-394    LQ------KSSQKPTVSITQTQDGSPVYCLEFNSQQTQ-----LLAAGDA----------KGMVKVWQ

   WD40 Template    TG------E------CLRTLSGHTSGVTSVSFSP-DGK-----RLVSGSE----------DGTIKVWD