Input parameters:

  Query = ENSMUSP00000044604 (Len=546)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044604, Len=546):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWINLPVLHLTKDPLKAPGRLDHGTRTAFIHHREQVWKRC 80  
WD40-rpts                                                       (______________________________

Query       81 INVWHDVGLFGVLNEIANSEEEVFEWVKTACSWALALCGRASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWH 160 
WD40-rpts      _________________WD 1______________________________________________)____________

Query      161 PHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS 240 
WD40-rpts      _WD 2_____________)   (_________________WD 3________________)                  (

Query      241 HPGHTPVTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWT 320 
WD40-rpts      ______________WD 4______________)   (_________________WD 5________________)(____

Query      321 CEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGGAKSATIVADLSETTIQTPDGEERLGGEAH 400 
WD40-rpts      _____________WD 6_________________)   (_________________WD 7________________)   

Query      401 SMVWDPSGERLAVLMKGNPQVQDGNPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIT 480 
WD40-rpts                                               (__________________WD 8________________

Query      481 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHEVPLFTETSPTSAPWDPLPGQSSAQPHSPHSHL 546 
WD40-rpts      __)                                                               

8 WD40-repeats found in QUERY=ENSMUSP00000044604 (Len=546):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    50-148      3.79  271.29  0.01367       12.5%      5.50
  WD 2:  Seg  7   147-179      6.75  393.53  0.00031       10.0%     46.42
  WD 3:  Seg 10   183-221      7.91  441.31  7.0e-05       10.0%     53.74
  WD 4:  Seg 15   240-273      6.06  365.01  0.00075       40.0%     44.21
  WD 5:  Seg 18   277-315      9.41  503.35  1.0e-05       25.0%     52.60
  WD 6:  Seg 22   316-355      5.98  361.82  0.00083       15.0%     53.47
  WD 7:  Seg 26   359-397      8.27  456.22  4.4e-05       22.5%     48.45
  WD 8:  Seg 34   442-483      3.55  261.32  0.01858       17.5%     50.67

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   50-148    LTK-DPLKAPGRLDHGTRTAFIH---HREQVWKRCINVWHDVGLFGVLNEIANSEEEVFEWVKTACSWALALCGRASSLHGSLF-PHLSLRSEDLIAEFAQVTN
   WD 2  147-179    --------TNWSSCCLRVFAWHP---H---------------T---------------------------------NKFAVALL-DDSIRVY-----------N
   WD 3  183-221    -TI-VPSLKHRLQRNVAALAWKP---L---------------S---------------------------------ASVLAVAC-QSCILIW-----------T
   WD 4  240-273    -------SHPGHTP-VTSLAWAP---N---------------G---------------------------------GWLLSASPVDAVILVW-----------D
   WD 5  277-315    -ET-CVPLPWFRGGGVTNLLWSP---D---------------G---------------------------------SKVLATTP-SAVFRVW-----------E
   WD 6  316-355    AQMWTCEAWPTLSGRCQTGCWSP---D---------------G---------------------------------NRLLFTVL-GEAL-IY-----------S
   WD 7  359-397    -PE-RCGTGKGHVGGAKSATIVA---D---------------L---------------------------------SETTIQTP-DGEERLG-----------G
   WD 8  442-483    LP--CGIIQGEPGAQAQLITFHPSFNK---------------G---------------------------------ALLSVCWS-TGRITHI-----------P

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSP---D---------------G---------------------------------KRLVSGSE-DGTIKVW-----------D