Input parameters:

  Query = ENSMUSP00000044692 (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044692, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFAT 80  
WD40-rpts                (_________________WD 1________________)   (_________________WD 2______

Query       81 CSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLT 160 
WD40-rpts      __________)    (_________________WD 3________________)      (_________________WD

Query      161 PDCSKMLISTSSGYLLILHELDLTKSLEVGSYPILRARRTTSSSGVSPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWA 240 
WD40-rpts       4_________________)                                   (_________________WD 5___

Query      241 TLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQC 320 
WD40-rpts      ______________)              (____________________WD 6____________________)     

Query      321 SELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF 375 
WD40-rpts                   (_________________WD 7________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000044692 (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-49       8.85  480.28  2.1e-05       20.0%     53.53
  WD 2:  Seg  6    53-91       6.77  394.23  0.00030       32.5%     50.12
  WD 3:  Seg 10    96-134      9.54  508.92  8.6e-06       32.5%     56.88
  WD 4:  Seg 14   141-180      7.11  408.43  0.00019       22.5%     45.90
  WD 5:  Seg 20   216-255      6.07  365.20  0.00074       17.5%     44.12
  WD 6:  Seg 25   270-315      6.15  368.65  0.00067       20.0%     47.40
  WD 7:  Seg 30   334-372      8.77  476.84  2.3e-05       25.0%     54.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-49     -ADS-------VYLST-RTHGAVFNLEYSPDG-S-VLTVACEQTEVLLFD
   WD 2   53-91     -SKH-------IKTLSEAHEDCVNNIRFL-DN-R-LFATCSDDTTIALWD
   WD 3   96-134    -NTK-------VCTLH-GHTSWVKNIEYDTNT-R-LLVTSGFDGNVIIWD
   WD 4  141-180    -DGC-------PHKKF-FHTRFLMRMRLTPDCSK-MLISTSSGYLLILHE
   WD 5  216-255    -TPE-------VPGER-DRGNCITSLQLHPKG-WATLLRCSSNTDDQEWT
   WD 6  270-315    SPRCSLRLTHYIEEAN-VGRGYIKELCFSPDG-R-MISSPH-GYGIRLLG
   WD 7  334-372    -LRV-------IRSLY-SHNDVVLTTKFSPTH-C-QIASGCLSGRVSLYQ

   WD40 Template    TGEC-------LRTLS-GHTSGVTSVSFSPDG-K-RLVSGSEDGTIKVWD