Input parameters:

  Query = ENSMUSP00000045201 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000045201, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRK 80  
WD40-rpts      (_________________WD 1________________)       (_________________WD 2____________

Query       81 LKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGS 160 
WD40-rpts      ____)(__________________WD 3_________________)   (__________________WD 4________

Query      161 ASIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM 240 
WD40-rpts      _________)   (_________________WD 5_________________)(____________________WD 6__

Query      241 DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLTT 320 
WD40-rpts      _________________)(_________________WD 7________________)(___________________WD 

Query      321 IQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGSMETTSEIVDSASHDCPLATQTYGTAAAKGAYVPSSPTRLG 400 
WD40-rpts      8__________________)                                                            

Query      401 KGQDANLEAYTDDLGAVGGACLEDEASALRLDEDSEHPPMILRTD 445 
WD40-rpts                                                   

8 WD40-repeats found in QUERY=ENSMUSP00000045201 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.67  390.34  0.00034       15.0%     43.32
  WD 2:  Seg  4    47-85       6.20  370.89  0.00062       15.0%     42.33
  WD 3:  Seg  8    86-126      5.43  338.82  0.00169        5.0%     22.95
  WD 4:  Seg 12   130-170      6.46  381.51  0.00045       20.0%     45.87
  WD 5:  Seg 16   174-213      8.19  452.81  4.9e-05       27.5%     53.47
  WD 6:  Seg 20   214-258      7.30  416.04  0.00015       25.0%     49.27
  WD 7:  Seg 24   259-297      4.04  281.57  0.00995       10.0%      7.17
  WD 8:  Seg 26   298-340      5.95  360.59  0.00086       20.0%     52.83

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MNLA-----SQSGE---AGAGQLLFANFNQDNTSLAVGS-K--SG-YKFFS
   WD 2   47-85     -EQI-----YECTD---TEDVCIVERLFSSSLVAIVSLKAP--RK-LKVCH
   WD 3   86-126    FKKG-----TEICN--YSYSNTILAVKLNRQRLIVCLEESL--YI-HNIRD
   WD 4  130-170    -LHT-----IRETP---PNPAGLCALSINNDNCYLAYPGSASIGE-VQVFD
   WD 5  174-213    -LRA-----ANMIP---AHDSPLAALAFDASGTKLATASEK--GTVIRVFS
   WD 6  214-258    IPEGQKLFEFRRGV---KRCVSICSLAFSMDGMFLSASSNT--ET-VHIFK
   WD 7  259-297    -LEA-----VREKP---PEEPTTWTGYFGKVLMASTSYLPS--QV-TEMFN
   WD 8  298-340    QGRA-----FATVRLPFCGHKNICSLTTIQKIPRLLVGASD--GY-LYMYN

   WD40 Template    TGEC-----LRTLS---GHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD