WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000045559 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000045559 (Len=3025) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000045559, Len=3025): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNLHQVLTGAVNPGDHCFAVGSVGEQRFTAYASGCDIVILGSNFERLQIIPGAKHGNIQVGCVDCSMQQGKIAASYGNVI 80
WD40-rpts
Query 81 SVFEPVSLPKKRKNLEFYSQWQKSGQFFLDSIAHNITWDPAGNRLLTGSSCLQLWCNSRKQTEDENPDKTDLNFGNWMCI 160
WD40-rpts
Query 161 WHCKTASQVHLMKFSPDGEFFATAGKDDCLLKVWYNVENWRPAVTSPDKNSEKQSQGEIDFSFVYLAHPRAVNGFSWRKT 240
WD40-rpts (_____________WD 1_____________)
Query 241 SKYMPRASVCNVLLTCCKDNVCRLWVETFLPNDCFLYGSDCNHWCEPVSLTNNLKRNASSKDRVQSALEVNLRPFRRGRS 320
WD40-rpts
Query 321 RSLALVAHTGYLPHQQDPHHAHRNTPLHANALCHFHIAASINPATDIPLLPSITSLSLNENEEKCGPFVVHWLNNKELHF 400
WD40-rpts
Query 401 TLSMEVFLQQLRKSFEQPSSEASVEDSIQADLKSDEELDDGVDDLKINHEKKELDEDKMLPSSSFTPLSSAAVDHQIEVL 480
WD40-rpts
Query 481 LSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIVMYACTKNVDLAIQQG 560
WD40-rpts
Query 561 KQRPTGLTRSTSMLISSAHSKSSNNLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLND 640
WD40-rpts
Query 641 LACHSVLPLLLTTSHHNALRTPNVGNQKQAHDAVNTEECSLAQQNKSNVDMAFQDPNAIYSELILWRVDPVGPLSFSGGV 720
WD40-rpts
Query 721 SELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLYELSNPEISKYVGEVFNIV 800
WD40-rpts
Query 801 SQQSTARPGCIIALDSITKLHGRKTQLLHVFQEDFILNNLEKKRLGVDNILLDSDSSCNGFSEKFYLVVIECTEDNRSLL 880
WD40-rpts
Query 881 RMWDLHLRSTPVSLDERIDTKISEASWLPEEHYSSSPEKILSPFSQKFQACRANLQSTSKLSLFSEMVYSKELDLPEGVE 960
WD40-rpts (__________
Query 961 IISVKPSAGHLSSSSIYPVCSAPYLLATSCSDDKVRFWRCRVTNGESATSKNGKLDVVYVWEEWPLLIEDGLENNSSVTV 1040
WD40-rpts ____________WD 2______________________)
Query 1041 PGRPVEVSCAHTSRLAVAYKQPTGNSRSQEFVMHVSIFECESTGGSCWILEQTIHLDELSTVLDSGISIDSNLVAYNKQE 1120
WD40-rpts
Query 1121 TYLVSKESITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPMAGKVQDQTGKENQAFPLWDSTKIVPLSKFVLLRSV 1200
WD40-rpts
Query 1201 DLVSSVEGAPPFPVSLSWVRDGILVVGMDCEMHVYSQWQPSNKQEPVISESYNGSTPSILSLIKQSNSSSSGLHPPKKTL 1280
WD40-rpts
Query 1281 TRSMTSLAQKICGKKSIFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNE 1360
WD40-rpts
Query 1361 AESNHERRLRSLTISASGSTTRDPQAFNKADSRDYTEIDSVPPLPLYALLAADDDSYCSSLEKTGSESSLKKSKQLSKES 1440
WD40-rpts
Query 1441 YDELFQTSVLMSDNHMLETDEENTQPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTSTD 1520
WD40-rpts
Query 1521 IGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQGLSTGHFAWAFHSVAEEELLNMLPAMQKDDPTWSE 1600
WD40-rpts
Query 1601 LRAMGVGWWVRNARILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTKMTQFFGHNFEEERWRKAAL 1680
WD40-rpts
Query 1681 KNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFESEFDKSATYKSILRKKVLGIGSPASELSSS 1760
WD40-rpts
Query 1761 SINAHHDPFLRSMAHWILEDYSAALETLIKQPVTEDEDQVMMSACNPIVFNFYNYLRTHPLLLRRHFGSSSETFSTHMTL 1840
WD40-rpts
Query 1841 AGKSGLAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVSKKAKPCCRGSSFLTSKDSSLKLDVREDKCCAADWS 1920
WD40-rpts
Query 1921 PSLTNGLESSSEGSSERHSHSTLSFDWSQPSVVFQDDSLELKWDSDNDEENEDPPISMKEIRPLQRKTVKEIDELSSYTD 2000
WD40-rpts
Query 2001 SLSTLDENDILNPSEDIIAVQLKFRACLKILTVELRTLSTGYEIDGGKLRYQLYHWLEKEVVALQRTCDFCSDADQLQTT 2080
WD40-rpts
Query 2081 FSQSADESGSTEDADDLHHQTKVKQLRESFQEKRQWLLKYQSLLRMFLSYCVLHGSHGGGLASVRMELILLLQESQQETA 2160
WD40-rpts
Query 2161 EPIFSNPLSEQTSVPLLFACTASAKTVVANPLLHLSNLTHDILHAIINFDSPPHPDSQTNKVYVMHTLAASLSACIYQCL 2240
WD40-rpts
Query 2241 CGSHNYSSFQTNQFTGMVYQTVLLAHRHSLRTGSLDESVTPNTSPAQWPGINFLIQLLNSSGEEAQSGLTVLLCEILTAV 2320
WD40-rpts
Query 2321 YLSLFIHGLATHSSNELFRIVAHPLNEKMWSAVFGGGAHVPSKGQANSKALSVLLIIIFFISLLVEGEKQNRHISPSKVS 2400
WD40-rpts
Query 2401 ARESPVSSSSGNQEPPAVKEKFVPPELSIWDYFIAKPFLPPSQSRAEYDSEESLESDDEEEEDDDDALPSGLQLHEHSNS 2480
WD40-rpts
Query 2481 NSFSWSLMRLAMVQLVLNNLKTFYPFAGHDLAELPVSSPLCHAVLKTLQCWEQVLLRRLEIHGGPPQNYISSHTSEENVS 2560
WD40-rpts
Query 2561 AGPAILRHKALLEPTNTPFKSKNHLALSVKRLWQYLVKQEEIQETFIRNIFTKKRCLNEIEADLGYPGGKARIIHKESDI 2640
WD40-rpts
Query 2641 ITAFAVNRANRNCIAIASSHDVQELDVSAILATQIYTWVDDDTETETKGSEDFLVIHARDDLSAVQGSTPYTHSNPGTPI 2720
WD40-rpts
Query 2721 NMPWLGSTQTGRGASVMLKKAINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRSGGNSRITRMRFNYQGNKF 2800
WD40-rpts (______________WD 3______________)(___________________WD 4______
Query 2801 GIVDADGYLSLYQTNWKCCPVTGSMPKPYLAWQCHNKTANDFVFVSSSSLIATAGLSSDNRNICLWDTLVAPANSLVHAF 2880
WD40-rpts ____________)(________________________WD 5________________________) (______
Query 2881 TCHDSGATVLAYAPKHQLLISGGRKGFTCIFDLRQRQQRQLFQSHDSPVKAIAIDPTEEYFVTGSAEGNIKIWSLSSFSL 2960
WD40-rpts ___________WD 6________________) (_________________WD 7________________)
Query 2961 LHTFINEHARQSIFRNIGTGVMQIETGPANHIFSCGADGTMKMRILPDQFSPLNEVLKNDVKFML 3025
WD40-rpts (__________________WD 8_________________)
 8 WD40-repeats found in QUERY=ENSMUSP00000045559 (Len=3025): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 164-195 3.53 260.34 0.01915 30.0% 32.64 WD 2: Seg 38 950-999 3.31 251.59 0.02505 17.5% 22.82 WD 3: Seg 66 2737-2770 4.55 302.76 0.00517 15.0% 46.83 WD 4: Seg 69 2771-2813 5.22 330.39 0.00219 22.5% 54.79 WD 5: Seg 73 2814-2867 3.37 254.01 0.02326 17.5% 43.17 WD 6: Seg 76 2874-2912 6.62 387.96 0.00037 25.0% 47.39 WD 7: Seg 79 2916-2954 7.36 418.54 0.00014 27.5% 44.50 WD 8: Seg 83 2965-3005 3.11 243.01 0.03257 25.0% 44.23Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 164-195 --------------------------------KTASQVHLMKFSPDGEFFATAG---KDDCLLKVWY WD 2 950-999 SK-----------ELDLPEGVEIISVKP--SAGHLSSSSIYPVCSAPYLLAT-S---CSDDKVRFWR WD 3 2737-2770 ---------------------------M--LKKAINNVRRMTSHPTLPYYLT-G---AQDGSVRMFE WD 4 2771-2813 WG--------HSQQI----------TCF--RSGGNSRITRMRFNYQGNKFGI-V---DADGYLSLYQ WD 5 2814-2867 TNWKCCPVTGSMPKP----------YLA--WQCHNKTANDFVFVSSSSLIAT-AGLSSDNRNICLWD WD 6 2874-2912 -N-----------SL----------VHA--FTCHDSGATVLAYAPKHQLLIS-G---GRKGFTCIFD WD 7 2916-2954 -R-----------QQ----------RQL--FQSHDSPVKAIAIDPTEEYFVT-G---SAEGNIKIWS WD 8 2965-3005 IN-----------EH----------ARQSIFRNIGTGVMQIETGPAN-HIFS-C---GADGTMKMRI WD40 Template TG-----------EC----------LRT--LSGHTSGVTSVSFSPDGKRLVS-G---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |