Input parameters:

  Query = ENSMUSP00000045812 (Len=919)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000045812, Len=919):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFAYRFSNLLGTVYRCGNLNFTHDGNSVISPVGNRVTVFDLKNNRSNTLPLATKYNIKCVGLSPDGRLAIIVDEGGAAL 80  
WD40-rpts        (_________________WD 1________________)   (_________________WD 2______________

Query       81 LVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFV 160 
WD40-rpts      __)  (________________WD 3________________)          (_________________WD 4_____

Query      161 VGSKDMSTWVFGAERWDNLIYYALSGHKDAIVACFFESNSLDLYSLSQDGALCVWQCDTPPEGLRLKAPRGWKADILQRE 240 
WD40-rpts      ___________)     (_________________WD 5________________)      (_________________

Query      241 KEEEEEDEEEGDRETTIRGKTTPAEQERVGKVKYSRLAKYFLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELPEF 320 
WD40-rpts      WD 6________________)                (_________________WD 7________________)   (

Query      321 NLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVW 400 
WD40-rpts      _________________WD 8_________________)   (_________________WD 9________________

Query      401 NTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDS 480 
WD40-rpts      )   (_________________WD10________________)   (__________________WD11___________

Query      481 FEIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAV 560 
WD40-rpts      ______)   (_________________WD12________________)   (_________________WD13______

Query      561 ATLNSQITFWDPENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILV 640 
WD40-rpts      __________)                            (______________WD14______________)       

Query      641 KRFELSCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGEENGVAVPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAAT 720 
WD40-rpts          (___________________WD15___________________)   (_________________WD16_______

Query      721 STEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSTSLPELYVV 800 
WD40-rpts      _________)                                                                      

Query      801 KVLEFLAASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDVSKLCDWNRFNIQYVLAVSKQR 880 
WD40-rpts                                                                                      

Query      881 GMKRTLEPVDTEEDSDASDEDSLHLLRAAGEEEEEEMLI 919 
WD40-rpts                                             

16 WD40-repeats found in QUERY=ENSMUSP00000045812 (Len=919):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       5.13  326.57  0.00247       20.0%     49.66
  WD 2:  Seg  5    45-83       6.27  373.65  0.00057       17.5%     56.77
  WD 3:  Seg  9    86-123      5.14  326.88  0.00245       25.0%     54.74
  WD 4:  Seg 13   134-172      7.37  419.20  0.00014       25.0%     54.32
  WD 5:  Seg 17   178-216      7.89  440.59  7.2e-05       30.0%     46.12
  WD 6:  Seg 20   223-261      6.19  370.16  0.00064       15.0%     36.43
  WD 7:  Seg 24   278-316      7.02  404.73  0.00022       17.5%     55.93
  WD 8:  Seg 28   320-359      6.70  391.30  0.00033       27.5%     55.29
  WD 9:  Seg 32   363-401      9.58  510.35  8.2e-06       32.5%     58.89
  WD10:  Seg 36   405-443     10.21  536.49  3.7e-06       45.0%     57.40
  WD11:  Seg 40   447-487      5.00  321.30  0.00291       22.5%     54.23
  WD12:  Seg 44   491-529      9.96  525.88  5.1e-06       40.0%     55.49
  WD13:  Seg 48   533-571      7.77  435.73  8.3e-05       27.5%     57.81
  WD14:  Seg 53   600-633      5.47  340.51  0.00160       15.0%     46.37
  WD15:  Seg 57   645-688      3.38  254.47  0.02293        7.5%     12.56
  WD16:  Seg 60   692-730      5.66  348.43  0.00125       25.0%     49.69

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     FAYRFSNLLGT-VYRCGNLNFTHDGNSV-----ISP-VGN--RVTVFD
   WD 2   45-83     -NRSNTLPLAT-KYNIKCVGLSPDGRLA-----IIV-DEGG-AALLVS
   WD 3   86-123    -CRSVLHHFHF-KGSVHSVSFSPDGRKF-----VVT-K-GN-IAQMYH
   WD 4  134-172    -FVLDKTYFGP-YDETTCIDWTDDSKCF-----VVG-SKDM-STWVFG
   WD 5  178-216    -NLIYYALSGH-KDAIVACFFESNSLDL-----YSL-SQDG-ALCVWQ
   WD 6  223-261    -GLRLKAPRGW-KADILQREKEEEEEDE-----EEG-DRET-TIRGKT
   WD 7  278-316    -AKYFLNKEGD-FNNLTSAAYHKKTHLL-----VTG-FASG-IFHLHE
   WD 8  320-359    -FNLIHSLSIS-DQRVASVAINSSGDWI-----AFGCSGMG-QLLVWE
   WD 9  363-401    -ESYVLKQQGH-FNSMVALAYSPDGQYI-----VTG-GDDG-KVKVWN
   WD10  405-443    -GFCFVTLTEH-SSGVTGVTFTTTGHVI-----VTS-SLDG-TVRAFD
   WD11  447-487    -YRNFRTFTSPRPTQFSCVAVDSSGEIV-----SAG-AQDSFEIFVWS
   WD12  491-529    -GRLLDVLSGH-EGPVSGLCFNPMKSIL-----ASA-SWDK-TVRLWD
   WD13  533-571    -SWRTKETLTL-TSDALAVTFRPDGAEL-----AVA-TLNS-QITFWD
   WD14  600-633    ------KHSAK-GKAFTTLCYSADGQSI-----LAG-GMSK-FVCLYH
   WD15  645-688    -LSCNLSLDAM-EEFLNRRKMTEFGNLALIDQDAGE-ENGV-AVPLPG
   WD16  692-730    -GDMSSRHFKP-EIRVTSLRFSPTGRCW-----AAT-STEG-LLIFSL

   WD40 Template    TGECLRTLSGH-TSGVTSVSFSPDGKRL-----VSG-SEDG-TIKVWD