Input parameters:
Query = ENSMUSP00000046475 (Len=747)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000046475, Len=747):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSHESYTNAAETPENISILSCLGETSGALVDTKTISDIKTMDPEVSLTPSSDVTGTEDSSVLSPQSTDVNSVDSYQGYE 80
WD40-rpts
Query 81 GDDDDEEDDEDDKDGDSNLPSLEDSDNFISCLENSYIPQNVEKREVVEEQSLGRRFHPYELEAGEVVEGQGGGSLFYPYE 160
WD40-rpts (__________________WD
Query 161 LEAGEVVEAQNVQNLFHRYELEEGEVVEAQVVQSMFPYYELEAGEVVEAEEVQGFFQRYELEAREVIGAQGGQGLSRHYG 240
WD40-rpts 1_________________) (_________________WD 2________________)
Query 241 LEGGEVVEATAVRRLIQHHELEEGEDVDDQEESSEMHEETSEDSSEQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRD 320
WD40-rpts (____________________WD 3____________________) (_______________
Query 321 RQLGSSGRFVYEACGARLFVQRFSLEHVFEGHSGCVNTVHFNQHGTLLASGSDDLKVIVWDWLKKRSVLNFDSGHKNNIL 400
WD40-rpts WD 4_______________) (_________________WD 5________________) (______________
Query 401 QAKFLPNCNDAILAMCGRDGQVRVAQLSAVAGTHMTKRLVKHGGASHRLGLEPDSPFRFLTSGEDAVVFNIDLRQAHPAS 480
WD40-rpts ____WD 6_________________) (_________________WD 7_________________)(_______
Query 481 KLLVIKDGDKKVGLYTVFVNPANVYQFAVGGQDQFMRIYDQRKIDENVNNGVLKKFCPHHLLSSDYPAHITSLMYSYDGT 560
WD40-rpts ______________WD 8_____________________) (_______________WD 9_
Query 561 EILASYNDEDIYIFNSSDSDGAQYAKRYKGHRNNSTVKGVYFYGPRSEFVMSGSDCGHIFIWEKSSCQIVQFLEADEGGT 640
WD40-rpts ______________) (__________________WD10__________________) (_____________
Query 641 INCIDSHPYLPVLASSGLDHEVKIWSPIAEPSKKLAGLKNVIKINKLKRDNFTLRHTSLFNNSMLCFLMSHVTQSNYGRS 720
WD40-rpts ____WD11_________________) (_________________WD12________________)
Query 721 WRGIRINAGGGDFSDSSSSSEETNQES 747
WD40-rpts
12 WD40-repeats found in QUERY=ENSMUSP00000046475 (Len=747):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 140-180 3.89 275.46 0.01202 7.5% 30.29
WD 2: Seg 9 182-220 5.26 331.75 0.00210 5.0% 38.91
WD 3: Seg 16 255-300 6.95 401.80 0.00024 15.0% 39.44
WD 4: Seg 20 305-340 4.26 290.43 0.00757 7.5% 33.36
WD 5: Seg 23 343-381 9.55 509.14 8.5e-06 35.0% 49.89
WD 6: Seg 27 386-426 6.93 401.03 0.00024 25.0% 51.47
WD 7: Seg 31 433-472 6.91 400.25 0.00025 20.0% 58.49
WD 8: Seg 35 473-520 5.63 347.04 0.00131 15.0% 53.49
WD 9: Seg 40 540-575 7.60 428.56 0.00010 20.0% 49.79
WD10: Seg 42 582-623 6.01 363.07 0.00080 32.5% 47.77
WD11: Seg 46 627-666 6.87 398.62 0.00026 20.0% 52.57
WD12: Seg 49 669-707 6.94 401.51 0.00024 15.0% 47.97
Multiple sequence alignment of 12 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 140-180 ELE-------A------GEVVEGQG--GGS-LFYPYE-LEAG--E-VVEAQNVQNLFHRYE
WD 2 182-220 EEG-------E------V-VEAQ-V--VQS-MFPYYE-LEAG--E-VVEAEEVQGFFQRYE
WD 3 255-300 LIQ-------HHELEEGEDVDDQ-E--ESS-EMHEET-SEDS--S-EQYDIEDDSLIDEWI
WD 4 305-340 -SP-------L------PRPRWN-V--LSA-LRDRQL-GSSG--R-FVYEAC---GARLFV
WD 5 343-381 -FS-------L------EHVFEG-H--SGC-VNTVHF-NQHG--T-LLASGSDDLKVIVWD
WD 6 386-426 -RS-------V------LNFDSG-H--KNN-ILQAKF-LPNCNDA-ILAMCGRDGQVRVAQ
WD 7 433-472 -TH-------M------TKRLVK-H--GGA-SHRLGL-EPDS--PFRFLTSGEDAVVFNID
WD 8 473-520 LRQAHPASKLL------VIKDGD-K--KVG-LYTVFV-NPAN-VY-QFAVGGQDQFMRIYD
WD 9 540-575 -----------------HLLSSD-Y--PAH-ITSLMY-SYDG--T-EILASYNDEDIYIFN
WD10 582-623 -AQ-------Y------AKRYKG-HRNNST-VKGVYFYGPRS--E-FVMSGSDCGHIFIWE
WD11 627-666 -CQ-------I------VQFLEA-D--EGGTINCIDS-HPYL--P-VLASSGLDHEVKIWS
WD12 669-707 -AE-------P------SKKLAG-L--KNV-IKINKL-KRDN--F-TLRHTSLFNNSMLCF
WD40 Template TGE-------C------LRTLSG-H--TSG-VTSVSF-SPDG--K-RLVSGSEDGTIKVWD