Input parameters:

  Query = ENSMUSP00000046732 (Len=380)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000046732, Len=380):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEIYAKFVSQKISKTRWRPVPSGSLQTTETFATGSWDNEENCVSLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDL 80  
WD40-rpts      (_____________________WD 1_____________________)(________________________WD 2___

Query       81 QFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWPAAHYHTGPSSPSYSSAPCTGIVCDNPEIVTVGEDGRINLFRVDH 160 
WD40-rpts      ____________________)                    (_______________WD 3_______________)   

Query      161 KEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFRQQGSEPCQILSLTGDRVPLHCVDRHPDQQHVVATGGQDG 240 
WD40-rpts      (_________________WD 4________________)       (_________________WD 5____________

Query      241 MLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTDAPEKSSLFHQGGRSSTFLSHSLSNQA 320 
WD40-rpts      _____)(___________________WD 6___________________)   (________________WD 7______

Query      321 GVHQSLVSSWLSTDPAKDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS 380 
WD40-rpts      __________)(____________________WD 8___________________)    

8 WD40-repeats found in QUERY=ENSMUSP00000046732 (Len=380):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       3.84  273.20  0.01289       15.0%     22.07
  WD 2:  Seg  4    49-101      5.54  343.45  0.00146       25.0%     53.54
  WD 3:  Seg  9   122-157      7.64  430.08  9.9e-05       25.0%     40.41
  WD 4:  Seg 12   161-199      6.35  376.85  0.00052       27.5%     53.86
  WD 5:  Seg 16   207-246      7.58  427.74  0.00011       25.0%     55.19
  WD 6:  Seg 20   247-290      7.83  438.09  7.8e-05       30.0%     51.81
  WD 7:  Seg 24   294-331      6.07  365.30  0.00074       12.5%     34.07
  WD 8:  Seg 27   332-376      5.10  325.28  0.00257       25.0%     22.58

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     MEE--------------IYAKFVSQKI-SKTRWRPVP-----SGSLQ-TTETF-ATGSWDNEENCVSLWS
   WD 2   49-101    IGDFGNLDSDGGFEGDHQL-----LCD-IRHHGDVMD-----LQFFD-QE-RI-VAASST---GCVTVFL
   WD 3  122-157    TG-----------------------PS-SPSYSSAPC-----TGIVC-DNPEI-VTVGED---GRINLFR
   WD 4  161-199    -KE--------------AV-----RTIDNADSSTLHA-----VTFLR-TPE-I-VTVNSI---GQLKIWD
   WD 5  207-246    -PC--------------QI-----LSL-TGDRVPLHC-----VDRHP-DQQHVVATGGQD---GMLSIWD
   WD 6  247-290    VRQ-----------GTMPV-----SLL-KAHEAEMWE-----VHFHPSNPDHL-FTCSED---GSLWHWD
   WD 7  294-331    -DA--------------PE-----KSS-LFHQGGRSS-----TFLSH-SLSNQ-AGVH-Q---SLVSSWL
   WD 8  332-376    STD--------------PA-----KDR-IEITSLLPSRTLSVNSLDV-LGPCL-VCGTDA---EAIYVTR

   WD40 Template    TGE--------------CL-----RTL-SGHTSGVTS-----VSFSP-DGKRL-VSGSED---GTIKVWD