Input parameters:

  Query = ENSMUSP00000046774 (Len=1274)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000046774, Len=1274):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEPAARHLSLPSGLLELCALLGASQDSLRGLEQIAQKRGVKSASSLVPEVLSVFVPPFTTKEDGQVPGASCALGKGRRR 80  
WD40-rpts                                                                                      

Query       81 SFRKKREKPRMEPWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGCVCVASEPKEDYIHFLVLTDVCGNRTYGVVAQY 160 
WD40-rpts                                                                                      

Query      161 YRPLHDEYCFYNGKSHWEPSVISARCFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAARLSLIPSP 240 
WD40-rpts                                                                                      

Query      241 PPGPLHLIFNMKPLQVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLMAECFVAYLH 320 
WD40-rpts                                                                                      

Query      321 PLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDHGSVTCSKSSDDNIDIPDVPLLLAQTFIQ 400 
WD40-rpts                                                                                      

Query      401 RVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQTLNCKIQHITLQLLVGIFREVKNHLNYEHRVFNSEEFLKTRAAGDQ 480 
WD40-rpts                                                                                      

Query      481 QFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDRMLISPRRPTVEKMASRKASPLHITHRRMVVSMPNLQD 560 
WD40-rpts                                                                                      

Query      561 ISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDIHFPLESQCVQAYYTDFVTLLSKAMALLGPGDSLLLAR 640 
WD40-rpts                                                                                      

Query      641 YFYLRGLLHLMQGQLLSALLDFQNLYKTDIGIFPADLVKRTVESMSASERAQAERTPELRRLITEVFDKHGEAPKADDAV 720 
WD40-rpts                                                                                      

Query      721 KNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTFGHEKQIDPETFRDFYTCWKETEAEAQEVSLPALLMEHLDK 800 
WD40-rpts                                                                                      

Query      801 NECVYKLSSSVKTNRGVGKIAMTQKRLFLLTEGRPGYVEIATFRNIEEVKNSTVAFLLLRIPTLKIKTVAKKEVFEANLK 880 
WD40-rpts                                                                                      

Query      881 SECDLWHLMVKEMWAGKQLADDHKDPQYVQQALTNVLLMDAVVGTLQSPSAIHAASKLAYFDNMKKKSPMAVPKTTSETL 960 
WD40-rpts                                                                                      

Query      961 KHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCALNEGKVVVFDASSWTVHQHCFKVGSSKVNCMVMAEHNQ 1040
WD40-rpts       (_________________WD 1_________________)              (_________________WD 2___

Query     1041 VWVGSEDSVIYIINVHSMSCNKQLTDHRSPVTGLAVHNGKKPSEIYSCSLDGTVIAWNVSTLRVISRFQLSYGDLLSISL 1120
WD40-rpts      _____________)   (__________________WD 3_________________)   (_________________W

Query     1121 HNDRIWCCTVHKILVVTPQGFVRQELKHPKDASFLAFQLLPEEQQLWAASTGVSELYMWSLKDLDQPPQKTYLQDCSEVT 1200
WD40-rpts      D 4________________)(_________________WD 5_________________)     (______________

Query     1201 CMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTVEKELVAHLDTVRTLCSAEDRYVLSGAGQEEGKIAIWKVE 1274
WD40-rpts      _____WD 6___________________)   (_________________WD 7_________________)  

7 WD40-repeats found in QUERY=ENSMUSP00000046774 (Len=1274):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   962-1001     7.59  428.22  0.00011       12.5%     24.47
  WD 2:  Seg 22  1016-1054     6.29  374.31  0.00056       15.0%     50.78
  WD 3:  Seg 26  1058-1098     7.98  444.46  6.4e-05       32.5%     45.04
  WD 4:  Seg 30  1102-1140     3.79  271.25  0.01369        7.5%     29.60
  WD 5:  Seg 34  1141-1180     7.27  415.02  0.00016        5.0%     49.49
  WD 6:  Seg 38  1186-1229     4.65  306.70  0.00457       27.5%     44.41
  WD 7:  Seg 42  1233-1272     6.92  400.48  0.00025       25.0%     46.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  962-1001   HKINPSAGETAPQAIE-----VLLYTPGRLDPA-EKVEDAHPKLWC
   WD 2 1016-1054   -WTVHQHCFKVGSSKV-----NCMVMAEHNQVW-VGSEDSVIYIIN
   WD 3 1058-1098   -MSCNKQLTDHRSPVT---GLAVHNGKKPSEIY-SCSLDGTVIAWN
   WD 4 1102-1140   -LRVISRFQLSYGDLL-----SISLHNDRIWCC-TVHKILVVTPQG
   WD 5 1141-1180   FVRQELKHPKDASFLA-----FQLLPEEQQLWA-ASTGVSELYMWS
   WD 6 1186-1229   -QPPQKTYLQDCSEVTCMIRVKRQIWVGGRGLS-QGKTRGKIYVMD
   WD 7 1233-1272   -VTVEKELVAHLDTVR-----TLCSAEDRYVLSGAGQEEGKIAIWK

   WD40 Template    TGECLRTLSGHTSGVT-----SVSFSPDGKRLV-SGSEDGTIKVWD