Input parameters:

  Query = ENSMUSP00000048337 (Len=677)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000048337, Len=677):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAGGGGSYDPLAPAGVPCAFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESHQR 80  
WD40-rpts       (__________________WD 1_________________)                               (______

Query       81 KKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKV 160 
WD40-rpts      __________WD 2_______________)   (__________________WD 3_________________)   (__

Query      161 KCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAV 240 
WD40-rpts      ______________WD 4_______________)   (_______________________WD 5_______________

Query      241 HDRLLNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSENKEEPVKLAVVCRDGQVHLFEHILNGHCKKPLTSNCTIQIAT 320 
WD40-rpts      ________)       (___________________WD 6__________________)                     

Query      321 PGKGKKVTPKPIPILAASFCLDKMSLLLVYGNWFQPTIERVALNSKDTHICLERDISNCWAPTVETAITKVKTPVMNSEA 400 
WD40-rpts                (___________________WD 7___________________)   (_________________WD 8_

Query      401 KVLVPGIPGHHAPIKLPPAQPKEAENKRKLGSTEATIEERLGAMDLDRKGRKDDLQTNSFAVLLTQGLESNDFEILNKVL 480 
WD40-rpts      _______________)                                                                

Query      481 QTKNVNLIKRTVLRIPLRVVIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRVKTF 560 
WD40-rpts                                                                                      

Query      561 QKLSNLHGKLILLVTQVTASEKSKKMTSPGQKAKLVYEEESSEEESDDEVPEKDSDDNWDEDEDKDSEKDEGVDEDNEEE 640 
WD40-rpts                                                                                      

Query      641 DEDMEDKEENEEDREVSSEKELNGDSDLDPENESEEE 677 
WD40-rpts                                           

8 WD40-repeats found in QUERY=ENSMUSP00000048337 (Len=677):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-42       7.34  417.75  0.00015       22.5%     44.75
  WD 2:  Seg  7    74-110      5.75  352.34  0.00111       10.0%     49.67
  WD 3:  Seg 11   114-154      7.91  441.41  7.0e-05       32.5%     57.90
  WD 4:  Seg 15   158-194      6.96  402.00  0.00024       37.5%     53.43
  WD 5:  Seg 19   198-249      6.41  379.46  0.00048       27.5%     52.16
  WD 6:  Seg 23   257-299      3.36  253.51  0.02361       12.5%     49.47
  WD 7:  Seg 30   331-374      4.97  320.07  0.00302       20.0%     27.42
  WD 8:  Seg 33   378-416      5.78  353.59  0.00107       15.0%     15.81

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-42     AAGGGG----SYD--PLAPAG-VPCAFSPDSQ--AY-------------FALASSDGQLRVWE
   WD 2   74-110    ---AKE----SHQ--RKKRKS-EVTGTKDQAD---L-------------LALGTAVGSILLYS
   WD 3  114-154    -GELHS----KLTSGGHENRV-NCIQWHQDND---C-------------LYSCSDDKYIVEWS
   WD 4  158-194    -CKVKC----KWK--GDNSSV-SSLCISPDGK---M-------------LLSAGR--TIKLWV
   WD 5  198-249    -KEVYR----HFT--GHATPV-SSLRFTTIRP---NESQPSDGITGLYFLSGAVHDRLLNVWQ
   WD 6  257-299    -KSAVM----SFT--VTDEPVYVDLTLSENKEEPVK-------------LAVVCRDGQVHLFE
   WD 7  331-374    PIPILAASFCLDK--MSLLLV-YGNWFQPTIE---R-------------VALNSKDTHICLER
   WD 8  378-416    -NCWAP----TVE--TAITKV-KTPVMNSEAK---V-------------LVPGIPGHHAPIKL

   WD40 Template    TGECLR----TLS--GHTSGV-TSVSFSPDGK---R-------------LVSGSEDGTIKVWD