Input parameters:

  Query = ENSMUSP00000048489 (Len=922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000048489, Len=922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRFKVSKFRHMEARPSRREAWISDIRAVTTPTCGNHIKSSCSLIAFNSDRPGVLGVISLEGHEENKRHVTYLGCHSDLV 80  
WD40-rpts                                                                    (_________________

Query       81 TDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALPSVPGVVLGPEELPVEVLQFHPTVDGVLVSTAGKTVKVWDVAKQQP 160 
WD40-rpts      __WD 1___________________)         (_________________WD 2________________)   (__

Query      161 LTELEAHKDLVQSAVWSRDGAIVGTACKDKQLRIFDPRARTQASQSTQAHENNRDIRLAWTGIQEHLVSTGFNQMREREA 240 
WD40-rpts      _______________WD 3________________)     (___________________WD 4_______________

Query      241 KLWDTRLFSSALASVTLDTSPGPLIPLLDPDSGLLVLAGKGENQLYCYEVTPQQPALSPVTQCILENVLRGAALVPRRAL 320 
WD40-rpts      ___)      (_________________WD 5________________)(____________________WD 6______

Query      321 AVMSCEVLQVLQLSDTAIIPISHHVPRKAVEFHEDLFPDTAGSVPASDAHMWWAGDNQQVQKVSLNPARRPHPCFTSSLV 400 
WD40-rpts      ______________)                                      (_____________WD 7_________

Query      401 PTMEPAPDMVQPAEMPRADTDLSEGFSSPSSLMSPSTPSSLGPSLSSTSGIGTSPSQRSLQSLLGPSSKFRHTQGSLLHR 480 
WD40-rpts      ____)                                                                    (______

Query      481 DSHITNLKGLNLTTPGESDGFCANRLRVAVPLLSSGGQVAVLELQKPGRLPDTALPTLQNGTAVMDLVWDPFDPHRLAVA 560 
WD40-rpts      __________________WD 8_______________________)(___________________WD 9__________

Query      561 GEDARIRLWRVPPGGLENVLTTPETVLTGHTEKIYSLRFHPLAADVLASSSYDLTVRIWDLQTGAERLKLQGHQDQIFSL 640 
WD40-rpts      _________)          (_________________WD10_________________)   (________________

Query      641 AWSPDGKQLATVCKDGHVRVYEPRSSPLPLQEGPGPEGGRGARIVWVCDGGCLLVSGFDSRSERQLQLYIADALAQGPSA 720 
WD40-rpts      _WD11________________)                                        (_________________

Query      721 LLGLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYEVLPEAPFFLECNSFTSPDPHKGFVLLPKTECDIQDVEFARCLRL 800 
WD40-rpts      _______WD12________________________)                                      (_____

Query      801 RQTSLEPVAFRLPRVRKEFFQDDVFPDTAVTWEPALSAKAWFEGANGQPRLLSLQPPGMTPVSQAPREVPARRAPSSAQY 880 
WD40-rpts      ____________WD13________________)                                               

Query      881 LEEKSDQQKKEELLNAMVAKLGNREDPLPQDSFEGVDEDEWD 922 
WD40-rpts                                                

13 WD40-repeats found in QUERY=ENSMUSP00000048489 (Len=922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    63-106      7.87  439.74  7.4e-05       45.0%     51.73
  WD 2:  Seg 10   116-154      7.01  404.14  0.00022       22.5%     45.30
  WD 3:  Seg 13   158-196      8.41  462.00  3.7e-05       25.0%     56.94
  WD 4:  Seg 17   202-244      4.83  314.24  0.00362       17.5%     40.78
  WD 5:  Seg 20   251-289      6.62  387.97  0.00037       10.0%     50.67
  WD 6:  Seg 24   290-335      2.91  234.82  0.04180       12.5%     30.95
  WD 7:  Seg 29   374-405      3.99  279.47  0.01062       12.5%      8.58
  WD 8:  Seg 31   474-526      6.30  374.77  0.00055       20.0%     20.35
  WD 9:  Seg 35   527-570      6.75  393.35  0.00031       25.0%     48.76
  WD10:  Seg 38   581-620      7.34  418.02  0.00014       35.0%     52.90
  WD11:  Seg 42   624-662      9.37  501.86  1.1e-05       35.0%     57.06
  WD12:  Seg 49   703-756      5.31  334.18  0.00195       17.5%     51.42
  WD13:  Seg 56   795-833      3.90  275.93  0.01184       15.0%     19.18

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   63-106    HEENKRHVT-------------YLG-------------C-----HSDLVTDLDFSPFD-DF-LLASGS----ADRTIKLWR
   WD 2  116-154    -SV---PGV-------------VLG-------------P-----EELPVEVLQFHP-T-VD-GVLVST----AGKTVKVWD
   WD 3  158-196    -QQ---PLT-------------ELE-------------A-----HKDLVQSAVWSR-D-GA-IVGTAC----KDKQLRIFD
   WD 4  202-244    QAS----QS-------------TQA-------------H-----ENNRDIRLAWTG-I-QE-HLVSTGFNQMREREAKLWD
   WD 5  251-289    -AL---ASV-------------TLD-------------T-----SPGPLIPLLDPD-S-GL-LVLAGK----GENQLYCYE
   WD 6  290-335    VTP---QQP-------------ALS-------------PVTQCILENVLRGAALVP-R-RALAVMSCE----VLQVLQLSD
   WD 7  374-405    ------------------------A-------------G-----DNQQVQKVSLNP-A-RR-PHPCFT----SSLVPTMEP
   WD 8  474-526    QGS---LLHRDSHITNLKGLNLTTP-------------G-----ESDGFCANRLRV-A-VP-LLSSGG----QVAVLELQK
   WD 9  527-570    PGRLPDTAL-------------PTL-------------Q-----NGTAVMDLVWDPFD-PH-RLAVAG----EDARIRLWR
   WD10  581-620    -TT---PET-------------VLT-------------G-----HTEKIYSLRFHPLA-AD-VLASSS----YDLTVRIWD
   WD11  624-662    -GA---ERL-------------KLQ-------------G-----HQDQIFSLAWSP-D-GK-QLATVC----KDGHVRVYE
   WD12  703-756    ERQ---LQL-------------YIADALAQGPSALLGLD-----VAPSTLLPSYDP-DTGL-VLLTGK----GDTRVFLYE
   WD13  795-833    -AR---CLR-------------LRQ-------------T-----SLEPVAFRLPRV-R-KE-FFQDDV----FPDTAVTWE

   WD40 Template    TGE---CLR-------------TLS-------------G-----HTSGVTSVSFSP-D-GK-RLVSGS----EDGTIKVWD