Input parameters:

  Query = ENSMUSP00000048796 (Len=550)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000048796, Len=550):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNTYDVKELIPEFFYFPEFLENQNEFNLGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFG 80  
WD40-rpts                                                                                      

Query       81 YKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNL 160 
WD40-rpts                                                                                      

Query      161 FQHLTELKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPK 240 
WD40-rpts                                            (__________________WD 1__________________)

Query      241 AQRTISGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQVMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTT 320 
WD40-rpts         (_________________WD 2_________________)   (_________________WD 3____________

Query      321 CMIWQITQQGGTPVGLAPKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTVQKGQYMRTLRLPCESSLFLTIPS 400 
WD40-rpts      ____)            (_________________WD 4________________)   (___________________W

Query      401 LAISWEGHIVVYSSLEEKSVLKDKNLLHLFSINGKYLGSQVLSEQISDMCIIGEHIITGSLQGLLSIRELHSLKLSVTPL 480 
WD40-rpts      D 5___________________)         (________________WD 6_______________)   (_______

Query      481 AMRLPIHCVSITKEYSHILVGLEDGKLIVVGVGKPAEMRSGQLSRKLWGSSKRLSQISAGETEYNTQDCK 550 
WD40-rpts      __________WD 7________________)                                       

7 WD40-repeats found in QUERY=ENSMUSP00000048796 (Len=550):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   199-240      4.28  291.31  0.00736       10.0%     24.87
  WD 2:  Seg  8   244-283      4.68  307.89  0.00441       25.0%     41.11
  WD 3:  Seg 11   287-325      8.61  470.23  2.9e-05       30.0%     57.07
  WD 4:  Seg 15   338-376      7.83  438.07  7.8e-05       35.0%     55.94
  WD 5:  Seg 19   380-423      5.68  349.26  0.00122       25.0%     53.62
  WD 6:  Seg 24   433-469      5.44  339.28  0.00167       15.0%     36.71
  WD 7:  Seg 28   473-511      6.87  398.33  0.00027       20.0%     54.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-240    SPELLITVSMNYVIGT-----HGWLPYDRNISNYFT-FIKDQTVTNPK
   WD 2  244-283    -TISG--PFAPGLEIT-----SKLFVVSHDAKLLFSAGHWDNSIQVMS
   WD 3  287-325    -GKIV--SHNIRHIDI-----VTCLATDYCGIHLIS-GSRDTTCMIWQ
   WD 4  338-376    -PKPF--QILYGHTDE-----ILSVGISTELDMAVS-GSRDGTVIIHT
   WD 5  380-423    -GQYM--RTLRLPCESSLFLTIPSLAISWEGHIVVY-SSLEEKSVLKD
   WD 6  433-469    NG-----KYLGSQVLS-----EQISDMCIIGEHIIT-GSLQGLLSIRE
   WD 7  473-511    -LKLS--VTPLAMRLP-----IHCVSITKEYSHILV-GLEDGKLIVVG

   WD40 Template    TGECL--RTLSGHTSG-----VTSVSFSPDGKRLVS-GSEDGTIKVWD