Input parameters:

  Query = ENSMUSP00000048898 (Len=1180)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000048898, Len=1180):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVVPEKNAVRILWGRERGTRAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80  
WD40-rpts                                            (___________________WD 1__________________

Query       81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160 
WD40-rpts      )   (_________________WD 2_________________)  (________________WD 3_____________

Query      161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240 
WD40-rpts      ___)(___________________WD 4___________________)                      (_________

Query      241 HNFLHMLSSRSSGIQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPLSSHPSRYHREL 320 
WD40-rpts      _____________WD 5_____________________)                                         

Query      321 APGLTGSEWTRTVLTLNSRSEVESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPSSGLATESDGGNGSSQN 400 
WD40-rpts                                                (_____________________WD 6____________

Query      401 NSGSIRHELQCDLRRFFLEYDRLQELDQSLSGETPQTQQAQEMLNNNIESERPGPSHLPTPHSSENNSNLSRGHLNRCRA 480 
WD40-rpts      ________)                                                                       

Query      481 CHNLLTFNNDTLRWERTTPNYSSGEASSSWHVSTTFEGMPPSGNQLPPLERTEGQMPSSSRLELSSSASSQEERTVGVAF 560 
WD40-rpts                                                                                      

Query      561 NQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRLSPAAYYAQRMIQYLSRRDSIRQRSMRYQQNRLRSSTSS 640 
WD40-rpts                                                                                      

Query      641 SSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAPSLGRFVPRRFLLPEYLPYAGIFHERGQPGLATHSSVNRVL 720 
WD40-rpts                                                                                      

Query      721 AGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEG 800 
WD40-rpts                                                                                      

Query      801 ILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGLASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRVFNVLY 880 
WD40-rpts                  (________________WD 7________________)                              

Query      881 PMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPEALNSGIEYYWDQLSETVFTVHSSSRSSERPGTSRATWRTD 960 
WD40-rpts                                                                                      

Query      961 RDMGLMNAIGLQPRNPTTSVTSQGTQTLALQLQNAETQTEREEEEPGAASSGPGEGEGSEYGGSGEDALSRIQRLMAEGG 1040
WD40-rpts                                                                                      

Query     1041 MTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTESGAARTSSPQPSTSRGLPSEPGQLAERALSPRTASWDQPSTS 1120
WD40-rpts                                                                                      

Query     1121 GRELPQPALSSSSPVPIPVPLASNEGPTMHCNVTNNSHLPEGDGSNRGEAAGPSGEPQNR 1180
WD40-rpts                                                                  

7 WD40-repeats found in QUERY=ENSMUSP00000048898 (Len=1180):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    39-81       5.78  353.56  0.00107       20.0%     48.93
  WD 2:  Seg  8    85-124      8.58  468.96  3.0e-05       35.0%     51.98
  WD 3:  Seg 12   127-164      5.52  342.84  0.00149       20.0%     49.61
  WD 4:  Seg 16   165-208      5.59  345.55  0.00137       17.5%     51.76
  WD 5:  Seg 22   231-279      5.18  328.83  0.00230       22.5%     19.32
  WD 6:  Seg 29   363-409      3.57  262.27  0.01805       17.5%     12.06
  WD 7:  Seg 37   813-850      3.03  239.62  0.03612       30.0%     38.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-81     WMK-WEGK-------RVE---------LPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE
   WD 2   85-124    -GK----C-------VHS---------LIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD
   WD 3  127-164    -GG----S-------ESW---------FTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD
   WD 4  165-208    WSRREPFA-------VVK---------TASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD
   WD 5  231-279    SQP----V-------RRTPLLHNFLHMLSSRSSGIQTEPFHPP-EQASSTQQDQGLLNRPS
   WD 6  363-409    QQE----GGSQASVYTSA---------TEGRGFPSSGLATESD-GGNGSSQNNSGSIRHEL
   WD 7  813-850    -GE----M-------LYT---------KRFGPNAI-SVSLSPM-GRYVMVGLASRRILLHP

   WD40 Template    TGE----C-------LRT---------LSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD