Input parameters:

  Query = ENSMUSP00000049381 (Len=612)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049381, Len=612):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKEIDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPHKMD 80  
WD40-rpts             (_________________WD 1_________________)(_________________________WD 2___

Query       81 SKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQKDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMT 160 
WD40-rpts      _____________________)            (________________WD 3_______________)   (_____

Query      161 PGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240 
WD40-rpts      ______________WD 4__________________)                                          (

Query      241 IQMWDLRFASSPLRVLENHARGILAVAWSMADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLS 320 
WD40-rpts      ______________________WD 5______________________)   (_________________WD 6______

Query      321 AASFDGRISVYSIMGGSIDGLRQKQVDKLSSSFGNLDPFGTGQPLPPLQIPQQSAQHSIVLPLKKPPKWIRRPVGASFSF 400 
WD40-rpts      ___________)   (_________________WD 7________________)      (________________WD 

Query      401 GGKLVTFESVAVPLQQGAEQQRRQPVFISQVVTEKDFLNRSAQLQHAVQSQGFIGYCQKKIEASQTEFEKNVWSFLKVNF 480 
WD40-rpts      8________________)                                                              

Query      481 EEDSRGKYLELLGYRKEDLGQKIALALNKVDGPDVALKDSDQVAQSDGEESPAAEEQLLGERIKEEKQECDFLPSAGGTF 560 
WD40-rpts                                                                                      

Query      561 NISVSGDIDGLITRALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLAQT 612 
WD40-rpts                                                          

8 WD40-repeats found in QUERY=ENSMUSP00000049381 (Len=612):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       5.52  342.53  0.00151        2.5%     46.18
  WD 2:  Seg  5    48-102      4.21  288.73  0.00798       20.0%     37.98
  WD 3:  Seg  9   115-151      6.68  390.75  0.00034       20.0%     48.55
  WD 4:  Seg 12   155-197      5.33  334.87  0.00191       22.5%     43.06
  WD 5:  Seg 18   240-289      7.31  416.49  0.00015       30.0%     45.93
  WD 6:  Seg 22   293-332      7.04  405.40  0.00021       30.0%     50.78
  WD 7:  Seg 25   336-374      3.57  262.31  0.01802       10.0%     -0.46
  WD 8:  Seg 27   381-418      5.79  353.65  0.00107       17.5%     16.66

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     RTAM---------QAWSP-------AQN---HPIYLATGTS-AQ-Q--------L-DATFSTNASLEIFE
   WD 2   48-102    LDLS---------DPSLDMKSCATFSSS---HRYHKLIWGP-HK-MDSKGDVSGV-LIAGGENGNIILYD
   WD 3  115-151    -------------IAQKD-------KHT---GPVRALDVNI-FQTN--------L-VASGANESEIYIWD
   WD 4  155-197    -FAT---------PMTPG-------AKTQPPEDISCIAWNR-QV-Q--------HILASASPSGRATVWD
   WD 5  240-289    VIQMWDLRFASSPLRVLE-------NHA---RGILAVAWSMADP-E--------L-LLSCGKDAKILCSN
   WD 6  293-332    -GEV---------LYELP-------TNT---QWCFDIQWCP-RN-P--------AVLSAASFDGRISVYS
   WD 7  336-374    -GSI---------DGLRQ-------KQV---DKLSSSFGNL-DP-F--------G-TGQPLPPLQIPQQS
   WD 8  381-418    --LP---------LKKPP-------KWI---RRPVGASFSF-GG-K--------L-VTFESVAVPLQQGA

   WD40 Template    TGEC---------LRTLS-------GHT---SGVTSVSFSP-DG-K--------R-LVSGSEDGTIKVWD