Input parameters:

  Query = ENSMUSP00000049518 (Len=1151)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049518, Len=1151):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKYPMMDNVPPITAMVHVASYCLLIAYCDDMRLRLFGDHHQEFIALSTVPCHFFISCLCYDSETEVLSSGTLGAVVTWLI 80  
WD40-rpts      (________________WD 1_______________)     (________________WD 2________________)

Query       81 VANGKGLQMAHRVALSGHELVQDLYMSMSMGSLVALCESVVRVFTHNAQGQLKEVKTFTLLSSGFSLTCSCGCVPQNTFY 160 
WD40-rpts                                                   (_____________________WD 3_________

Query      161 AGNKNGEVYAWNLDDSKFLNSFMAHPSSVISIYSRPETYTLFTAGSDGMLKEWNLASGNLLRQLTVGTDLQQLQFIDSST 240 
WD40-rpts      ___________)   (_________________WD 4________________)                          

Query      241 FFCQNTSSFSLYLLPHFYNLFNICGSAPQKIQRVFCGHNCTRILCATEDSLLRFLSPVTGDLLIVTWPLLAMDQAVAWAY 320 
WD40-rpts                     (__________________WD 5_________________)                        

Query      321 HSEREELFVAIGSSELLVFDATRSPCPAKYLLCTSENYKDKIKCLAYGVSHLVGSKKGLMFCGYESGIVRILSQDCSRRT 400 
WD40-rpts                                  (____________________WD 6___________________)  (____

Query      401 EKTIHSGAVLALCTPEDSEESSLVCTYGKDNYIHLTKVVHSEKRMDLQPMTAIVCVCPLKHVVLLPGSVGAITEHSCWFL 480 
WD40-rpts      ______________WD 7__________________)                                           

Query      481 WHYQDSTKAAPSSNAMVRHTNTLHECAVTSFDVCLSLKLFVTGATDGSVRVWDFRGKLITHFESELHFSSPCFANSRGDL 560 
WD40-rpts                    (_________________WD 8________________)                           

Query      561 LLTFDQSIYIVSCLNLLPFSYLINLNTLTFEEDTIETPRPFLPSFFFLFELIFVPKFIYMEQNVQELQGLETLINKRAIA 640 
WD40-rpts                                                                                      

Query      641 FDDIVPHVVEEGRHTSTTMQERTRLYFEQEKFVDFSISDSKIKYSDAVPAQLKVPAWDGLNPYRLLKDFFGKGQKWPFAP 720 
WD40-rpts                                                                                      

Query      721 DCYIPNSVIRARLWPDGTPVFLRYDLCLSYEEMAEEVPEPLRLHSVPSLSPDDMEIRTSKLKDVYQEQKRESYGILERMS 800 
WD40-rpts                                                                                      

Query      801 DKSWMGKRFSDGIIESMVETILSLTVFCSTEKYKKYFNALAEIFITHQVPSRIRIETACRLLKDITHYNASIRELAWEML 880 
WD40-rpts                                                                                      

Query      881 ERLGFISQVFTVPLIMGLMDSEKAVRAKVVQLLSKYTGIQSKAMLLHQLRQPHVYHQLHEEVADDFSLSDILKVQAHDLQ 960 
WD40-rpts                                                                                      

Query      961 DLHGCIKERLNEDLSLSNRAGSLRFSIDLEKDLEMAVKESLMSVPGSKMVDGLKKRRKHIQNKTRKIVRRTLKISKRSKK 1040
WD40-rpts                                                                                      

Query     1041 TDLQKEILEIAAEPRKGRRIVQVDTKDGSLMPELPLGSDKIQEETQEATEVKEELVDKGALGVKGTLAAKRALGAKEALG 1120
WD40-rpts                                                                                      

Query     1121 AEEILGAEEILGTKEALEEEALATLGATDKD 1151
WD40-rpts                                     

8 WD40-repeats found in QUERY=ENSMUSP00000049518 (Len=1151):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       4.34  294.04  0.00677        7.5%     34.91
  WD 2:  Seg  4    43-80       3.96  278.15  0.01106       15.0%     52.94
  WD 3:  Seg 12   126-172      4.76  311.14  0.00399       15.0%     52.89
  WD 4:  Seg 16   176-214      7.82  437.53  7.9e-05       27.5%     55.59
  WD 5:  Seg 24   256-296      4.52  301.41  0.00539       15.0%     52.62
  WD 6:  Seg 32   349-393      4.11  284.50  0.00909       12.5%     50.37
  WD 7:  Seg 36   396-437      4.95  319.14  0.00311       12.5%     54.33
  WD 8:  Seg 45   495-533      7.65  430.67  9.8e-05       32.5%     54.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ----------MKYPMMD-NVPPITAMVH------VASYCLLIAYCDDMRLRLFG
   WD 2   43-80     -FI-------ALSTVPC-HFF-ISCLCY------DSETEVLSSGTLGAVVTWLI
   WD 3  126-172    HNAQGQLKEVKTFTLLS-SGFSLTCSCG------CVPQNTFYAGNKNGEVYAWN
   WD 4  176-214    -SK-------FLNSFMA-HPSSVISIYS------RPETYTLFTAGSDGMLKEWN
   WD 5  256-296    HFY-------NLFNICGSAPQKIQRVFC------GHNCTRILCATEDSLLRFLS
   WD 6  349-393    -KY-------LLCTSEN-YKDKIKCLAYGVSHLVGSKKGLMFCGYESGIVRILS
   WD 7  396-437    -CS-------RRTEKTI-HSGAVLALCT---PEDSEESSLVCTYGKDNYIHLTK
   WD 8  495-533    -AM-------VRHTNTL-HECAVTSFDV------CLSLKLFVTGATDGSVRVWD

   WD40 Template    TGE-------CLRTLSG-HTSGVTSVSF------SPDGKRLVSGSEDGTIKVWD