Input parameters:

  Query = ENSMUSP00000049946 (Len=526)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049946, Len=526):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LCAAARDSAAMAGPGAPCDPCAPAAVWKRHIVRQLRHRDRTQKALFLELVPAYNHLLEKAELLAKFSEKLKSEPKDAIST 80  
WD40-rpts                                                                                      

Query       81 RHEDWREEVSGTGPDQVSSPASLRVKWQQEKKGLQLVCGEMAYQVVKKSAALDTLQSQLEERQDRLEALQACVVQLQEAR 160 
WD40-rpts                                                                                      

Query      161 AQQSRQLEERQAENAAQRAACAAANQALVSQELKKAAKRTVSISEIPNTLEDGTKEETVALAPAALPEFSESETCEKWKR 240 
WD40-rpts                                         (___________WD 1___________)_________________

Query      241 PFSFKKRRGHSVGGAPEQRYQSIPVCVSAQIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEAN 320 
WD40-rpts      _WD 2__________________)        (_________________WD 3________________)(________

Query      321 QTLEGAGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKGSRTINVLSYCNDVVCGDHIIISGHNDQKIRFWDSRGP 400 
WD40-rpts      ___________WD 4___________________)(__________________WD 5_________________)  (_

Query      401 HCIQVIPVQGRVTSLHLSYDQLHLLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVFSPDRSYALAGSSNGDLY 480 
WD40-rpts      ________________WD 6________________)   (___________________WD 7________________

Query      481 IWDVNTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQGRKVVLWH 526 
WD40-rpts      __)   (_________________WD 8_________________)

8 WD40-repeats found in QUERY=ENSMUSP00000049946 (Len=526):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   196-223      4.68  307.82  0.00442       15.0%     32.40
  WD 2:  Seg  4   222-264      5.92  359.17  0.00090       12.5%     33.57
  WD 3:  Seg  7   273-311      9.57  509.95  8.3e-06       30.0%     52.12
  WD 4:  Seg 11   312-355      9.31  499.37  1.2e-05       27.5%     49.99
  WD 5:  Seg 15   356-396      6.18  369.74  0.00065       22.5%     37.10
  WD 6:  Seg 18   399-437      7.82  437.77  7.8e-05       35.0%     53.82
  WD 7:  Seg 22   441-483      8.05  447.28  5.8e-05       27.5%     53.30
  WD 8:  Seg 26   487-526      7.81  437.20  8.0e-05       25.0%     51.06

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  196-223    ------------------------AAKRTVSISEIPNTLEDGTKEETVALAP
   WD 2  222-264    AP----AALPEFSESET-C----EKWKRPFSFKKRRGHSVGGAPEQRYQSIP
   WD 3  273-311    -S----QAQ---DVLDA-H----LSEVNAVCFGPNSSLLATGGADRLIHLWN
   WD 4  312-355    VVGGRLEAN---QTLEG-A----GGSITSVDFDPSGSQVLAATYNQAAQLWK
   WD 5  356-396    VG----ETQ---SKGSRTI----NVLSYCNDVVCGDHIIISGHNDQKIRFWD
   WD 6  399-437    -G----PHC---IQVIP-V----QGRVTSLHLSYDQLHLLSCSRDNTLKVID
   WD 7  441-483    -S----NIR---QVFRA-DGFKCSSDWTKAVFSPDRSYALAGSSNGDLYIWD
   WD 8  487-526    -G----KLE---TSLQGPH----CTAVNAVAWCFSGNHVVSVDQGRKVVLWH

   WD40 Template    TG----ECL---RTLSG-H----TSGVTSVSFSPDGKRLVSGSEDGTIKVWD