Input parameters:

  Query = ENSMUSP00000050532 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000050532, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKIEDQFASLHIVRRSSEPKEPTYLLGIDTSKTVQADKGGLVAVLCSNGSIRIYDKETLHLLREFGGSPGLLSGVSFAN 80  
WD40-rpts                      (_________________WD 1_________________)   (_________________WD 

Query       81 SCDSVYSASTDGTVKCWDARGASEKPVQLFKGYPSCSFISFDVNCKDHVICAGAEKVDEDALLVFWDARFTSQDLSTRDP 160 
WD40-rpts      2________________)     (___________________WD 3___________________)           (_

Query      161 LGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALVATCNSVSSVSCIGWCGKDYKQIYCMTHDEGF 240 
WD40-rpts      ________________WD 4_________________)   (___________________WD 5_______________

Query      241 CWWDLNHLDTDEPITCLNIQDVREITDVKDGHLDYLIGGLYHEKMDRLFVIGGTNTGKIHLLSCTSAGLTHVTSLHGGHA 320 
WD40-rpts      ___)          (______________________WD 6_____________________)      (__________

Query      321 ATVRSFCWNVSEDSLLTGGEDAQLLLWKPGAMEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRKQQ 386 
WD40-rpts      _______WD 7________________)   (_______________WD 8______________)

8 WD40-repeats found in QUERY=ENSMUSP00000050532 (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-56       7.43  421.69  0.00013       12.5%     31.52
  WD 2:  Seg  4    60-98       9.79  519.03  6.3e-06       35.0%     56.97
  WD 3:  Seg  8   104-147      6.01  363.02  0.00080       20.0%     50.42
  WD 4:  Seg 12   159-198      7.43  421.40  0.00013       32.5%     39.94
  WD 5:  Seg 15   202-244      7.38  419.31  0.00014       25.0%     42.79
  WD 6:  Seg 19   255-303      6.76  393.82  0.00031       20.0%     44.21
  WD 7:  Seg 23   310-348      8.32  458.24  4.1e-05       22.5%     48.96
  WD 8:  Seg 26   352-386      2.87  233.41  0.04363       15.0%     16.67

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-56     SS-------EPKEPTYLLGI-DTSKTV----QAD--KGGL-VAVLCS----NGSIRIYD
   WD 2   60-98     -L-------HLLREFGGSPG-LLSGVS----FAN--SCDS-VYSAST----DGTVKCWD
   WD 3  104-147    -E-------KPVQLFKGYPSCSFISFD----VNC--KDHV-ICAGAEKVDEDALLVFWD
   WD 4  159-198    -D-------PLGAYSETHSD-DITQVR----FHP--SNPNLVVSGST----DGLVNVFD
   WD 5  202-244    -D-------KEEDALVATCN-SVSSVSCIGWCGK--DYKQ-IYCMTH----DEGFCWWD
   WD 6  255-303    TCLNIQDVREITDVKDGHLD-YLIGGL----YHEKMDRLF-VIGGTN----TGKIHLLS
   WD 7  310-348    -T-------HVTSLHGGHAA-TVRSFC----WNV--SEDS-LLTGGE----DAQLLLWK
   WD 8  352-386    -M-------EKTFTKKDSLK-IASSV------QQ--RVRV-HSSDSY----KKRKQ--Q

   WD40 Template    TG-------ECLRTLSGHTS-GVTSVS----FSP--DGKR-LVSGSE----DGTIKVWD