WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000055602 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000055602 (Len=1888) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000055602, Len=1888): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVRERKCILCHIVYGSKKEMDEHMRSMLHHRELENLKGRDISHECRVCRVTEVGLSAYAKHISGQLHKDNVDAQEREDDG 80
WD40-rpts
Query 81 KEEEEEEYFDKELVQLIQERKEQSRQDEPPSNSQEVNSDDRQPQWRREDRIPYQDRESYSQPPRHHRGPPQRDWKWEKDG 160
WD40-rpts
Query 161 FNSTRKNSFPHSLRNSGGPRGSSVWHKGATRGSSTWFLNHSNSGGGWHSNNGMVDWNYNGTGRNSSWHSEGTGGFPSWHM 240
WD40-rpts
Query 241 NNSNGNWKSSVRSTNSWNYNGPGDKFQQGRNRNPNYQMEDMTKMWNKKSNKPSKYSQERCKWQRQDRDKAAKYRSPPEGY 320
WD40-rpts
Query 321 ASDTFPSEGLLEFNFEQRESQTTKQTDTAASKINGKNGTKARDKFRRWTPYPSQKTLDLQSALKEVIGSKSDTLEKPLFN 400
WD40-rpts
Query 401 FSLITAGLRKPVDKTSNPPVIKTQKAGPPGSPSHKAISDGTAFCEVPRACPITEQSEPHQKSNKIPLLKSPLLPLPTPKS 480
WD40-rpts
Query 481 GPHKQNLKNRSKNKETKSFPSGDHSHLLNTSTLEGSHGSSYTSKSRGLCPRVLKENKTVSGTQKEPDEKLNSTSQKAQDT 560
WD40-rpts
Query 561 VLQCPKTLQNPLPTTPKRTENDAKESSVEESAKDSLSIESQPHSAGNSAMTSDAENHGIKSEGVASLTTEVVSCSTHTVD 640
WD40-rpts
Query 641 KEQGSQIPGTPENLSASPCNSTVLQKEAEVQVSAATSPHSGLLLNLKTSLEDAQDNNLVKSDGPFETESFEDTSLDAELQ 720
WD40-rpts
Query 721 KPDLNNQPPGTLLPELSKLGFPASLQRDLSRHISLKSKTGTHLPEPNLNSARRIRNVSGHRKNETEKESGLKPTLRQILN 800
WD40-rpts
Query 801 ASRRNVNWEQVIQQVTKKKQELGKGLPRFGIEMVPLVQNEQEVLDLDEEPDLSSLEGFQWEGVSIPSSSGLARKRSLSES 880
WD40-rpts
Query 881 SVVMDRAPVYSFFTGEGTGKENEAQQSPSPNTALSAAQSQKTAMYLEQEVAPLTPSVGTGERVGNIPTQRRHSAQLPSGH 960
WD40-rpts
Query 961 IMPVMHSARDLHSQERSTPLSERHAQESTGEGNSLTSNASSGHAVSSLADAATDSSCTSGAEQTDGHSIRKKRRATGDGS 1040
WD40-rpts
Query 1041 SPELPSLERKNKRRKIKGKKERSQVDQLLTISLREEELSKSLQCMDNKLLQARAALQTAYVEVQRLLVLKQQITVEMSAL 1120
WD40-rpts
Query 1121 RTHRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFLDPPPSHASLPSSGNPLQITTCTLQ 1200
WD40-rpts
Query 1201 AHGTAPDSSVQIKQEPMSPEQEGNMNALPQGCASNVSKELLQTNRVVDDGSSVYPAIPAVIASESTENCQEVSKDLNFSV 1280
WD40-rpts
Query 1281 EQGNSRSKGNSPSCQSPDLPGINRGEETAKGSSGSEACSSSFLRLSFTPETPAEKETQSPADQPEQQAESTLASAETRGS 1360
WD40-rpts
Query 1361 KKKKKLRKKKTLRATHVPENSDTEQDVFTAKPARKVKTAKAAKGAKVTTSQTGQEQGTARDEPDSDSSLEVLEVTNPQLE 1440
WD40-rpts (___________________WD 1__________________)
Query 1441 VVAIDTSESGDEKPDSPSKKDAWIAAEQNPIETSRSGCDEVSSTSELGTRYKDGVPVSVAETQTVISIKASKHSSEISSE 1520
WD40-rpts (___
Query 1521 PGDDEEPTEGSFEGHQAAVNAIQIFGNFLYTCSADTTVRVYNLVSRKCVGVFEGHTSKVNCLLVTHTSGKSSVLYTGSSD 1600
WD40-rpts _________________WD 2____________________) (__________________WD 3____________
Query 1601 HTIRCYNIKTRECMEQLQLEDRVLCLHNRWRTLYAGLANGTVVTFDIKNNKRQEIFECHGPRAVSCLATAQEGARKLLVV 1680
WD40-rpts ______) (_______________WD 4_______________) (__________________WD 5________
Query 1681 GSYDCTISVRDARNGLLLRTLEGHSKTVLCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVT 1760
WD40-rpts __________) (________________WD 6_______________) (________________WD 7_____
Query 1761 ACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSVIYTGCYDGSIQAVRLNLMQNYRCWWYGCTLIFGVVDHLKQHLL 1840
WD40-rpts __________) (________________WD 8_______________)
Query 1841 TDHTNPNFQTLKCRWRNCDAFFTARKGSKQDVAGHIERHAEDDSKIDS 1888
WD40-rpts
 8 WD40-repeats found in QUERY=ENSMUSP00000055602 (Len=1888): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 1367-1409 4.66 307.09 0.00452 7.5% 42.42 WD 2: Seg 16 1517-1562 5.35 335.65 0.00186 22.5% 44.72 WD 3: Seg 20 1566-1607 7.25 414.19 0.00016 32.5% 52.75 WD 4: Seg 24 1611-1646 4.53 301.61 0.00535 20.0% 50.88 WD 5: Seg 28 1650-1691 6.03 363.84 0.00078 32.5% 53.96 WD 6: Seg 32 1695-1731 6.72 392.19 0.00032 32.5% 53.04 WD 7: Seg 36 1735-1771 6.80 395.63 0.00029 32.5% 51.15 WD 8: Seg 40 1775-1811 4.81 313.44 0.00371 17.5% 51.21Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1367-1409 RKK-----KTLRATHVPENSD-TEQDVFT---AKPA--RKVKTAKAAKGAKVTT WD 2 1517-1562 ISSEPGDDEEPTEGSFEGHQA-AVNAIQI---F--G--NFLYTCSADTTVRVYN WD 3 1566-1607 -RK--------CVGVFEGHTS-KVNCLLVTHTSGKS--SVLYTGSSDHTIRCYN WD 4 1611-1646 -RE--------CMEQLQLED----RVLCL---HNRW--RTLYAGLANGTVVTFD WD 5 1650-1691 -NK--------RQEIFECHGPRAVSCLAT---AQEGARKLLVVGSYDCTISVRD WD 6 1695-1731 -GL--------LLRTLEGHSK-TVLCMKV---VND----LVFSGSSDQSVHAHN WD 7 1735-1771 -GE--------LVRIYKGHNH-AVTVVNI---L--G--KVMVTACLDKFVRVYE WD 8 1775-1811 -HD--------RLQVYGGHKD-MIMCMTI-----HK--SVIYTGCYDGSIQAVR WD40 Template TGE--------CLRTLSGHTS-GVTSVSF---SPDG--KRLVSGSEDGTIKVWD |
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