Input parameters:

  Query = ENSMUSP00000056358 (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000056358, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLPRLPLMEIFSYLDAYSLLQVAQVNKNWNELASSDVLWRKLCQKRWFYCNMVTQQLLGKETWKEFFIYRTWQEHAK 80  
WD40-rpts                                                                                      

Query       81 SRAKPEDFIYKEIPAEYGIQAYACYISEHGLTRNGQGRSVICMATSMNRISTWDIHEGVLTWVSPEQPASIKLLTTLPEM 160 
WD40-rpts            (_____________________WD 1_____________________)   (_________________WD 2_

Query      161 YIAVTVDMESTIKLWDCHNSEALATNSLISPCQSLKAVITKDGPIVLIGDTLGNLNIFRIPDLYHITRLKVFPYGISELY 240 
WD40-rpts      _______________)   (_________________WD 3_________________)   (_________________

Query      241 CSPQKKWIFLNRKHPHILPKVFYMSSLLRTSEFSAPVSTDLKFSLCQRAFWTPRREDRITLMSIHGPKKIKKFITFDMEL 320 
WD40-rpts      WD 4________________)   (_________________WD 5________________)                 

Query      321 EKIGNKITVKEHFFASFSLQNYEERPEWYGVSDKDVIVCSTRFSLLLFDINGHCLQAFQYCPEQILRLWVDPLHVIVSCN 400 
WD40-rpts                (_________________WD 6________________)  (_________________WD 7_______

Query      401 DGFLDVYAWEERSQQLNKCYRLQYSKHLPSSGLINKTLSDDVSIIQVITIRTTPCFLMAFILKSALEN 468 
WD40-rpts      _________)(________________WD 8________________)                    

8 WD40-repeats found in QUERY=ENSMUSP00000056358 (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    87-134      3.19  246.23  0.02952        7.5%     36.68
  WD 2:  Seg  7   138-176      8.43  462.99  3.6e-05       20.0%     54.19
  WD 3:  Seg 11   180-219      6.75  393.66  0.00031       20.0%     53.24
  WD 4:  Seg 15   223-261      7.36  418.62  0.00014       15.0%     52.07
  WD 5:  Seg 19   265-303      4.52  301.35  0.00540       17.5%     28.65
  WD 6:  Seg 25   331-369      6.09  366.16  0.00072       10.0%     38.00
  WD 7:  Seg 29   372-410      6.94  401.34  0.00024       12.5%     37.09
  WD 8:  Seg 33   411-448      3.32  251.81  0.02488       17.5%     14.31

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   87-134    DFIYKEIPAEYG-IQAYACYISEHGLTRNGQGRSVICMATSMNRISTWD
   WD 2  138-176    GVLTWVSPEQPA-SIKLLTT---------LPEMYIAVTVDMESTIKLWD
   WD 3  180-219    SEALATNSLISPCQSLKAVI---------TKDGPIVLIGDTLGNLNIFR
   WD 4  223-261    LYHITRLKVFPY-GISELYC---------SPQKKWIFLNRKHPHILPKV
   WD 5  265-303    SSLLRTSEFSAP-VSTDLKF---------SLCQRAFWTPRREDRITLMS
   WD 6  331-369    EHFFASFSLQNY-EERPEWY---------GVSDKDVIVCSTRFSLLLFD
   WD 7  372-410    GHCLQAFQYCPE-QILRLWV---------DPLHVIVSCNDGFLDVYAWE
   WD 8  411-448    -ERSQQLNKCYR-LQYSKHL---------PSSGLINKTLSDDVSIIQVI

   WD40 Template    GECLRTLSGHTS-GVTSVSF---------SPDGKRLVSGSEDGTIKVWD