Input parameters:

  Query = ENSMUSP00000056359 (Len=305)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000056359, Len=305):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVDISHTLPIAA 80  
WD40-rpts          (___________________WD 1___________________)     (_________________WD 2_____

Query       81 SSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240 
WD40-rpts      _______________)   (_________________WD 5________________)   (_________________W

Query      241 CPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYDCPI 305 
WD40-rpts      D 6________________)   (_________________WD 7________________)   

7 WD40-repeats found in QUERY=ENSMUSP00000056359 (Len=305):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-48       8.30  457.42  4.3e-05       27.5%     54.36
  WD 2:  Seg  5    54-92       9.21  495.12  1.3e-05       37.5%     53.37
  WD 3:  Seg  9    96-134      9.42  503.74  1.0e-05       20.0%     55.16
  WD 4:  Seg 13   138-176     10.07  530.73  4.4e-06       37.5%     57.72
  WD 5:  Seg 17   180-218     10.83  561.90  1.7e-06       47.5%     57.47
  WD 6:  Seg 21   222-260     10.63  553.62  2.1e-06       47.5%     57.68
  WD 7:  Seg 25   264-302      9.64  512.93  7.6e-06       30.0%     53.87

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-48     YSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWK
   WD 2   54-92     -LELQWSLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWD
   WD 3   96-134    -GKQMKSIDAGPVDAWTLAFSPDSQ----YLATGTHMGKVNIFG
   WD 4  138-176    -GKKEYSLDTRGKFILSIAYSPDGK----YLASGAIDGIINIFD
   WD 5  180-218    -GKLLHTLEGHAMPIRSLTFSPDSQ----LLVTASDDGYIKIYD
   WD 6  222-260    -ANLAGTLSGHASWVLNVAFCPDDT----HFVSSSSDKSVKVWD
   WD 7  264-302    -RTCIHTFFDHQDQVWGVKYNGNGS----KIVSVGDDQEIHVYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD