Input parameters:

  Query = ENSMUSP00000056965 (Len=737)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000056965, Len=737):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISRKRSEFGAPVTFSDQNASSVKDAYIECTSYPEKNYTLSQVEKDVGLQVIAEVKDTSTQTKWAFPKNATTQYYPREFS 80  
WD40-rpts                                                                                      

Query       81 EEEKSLIGKSKSLVDFFNNVSTSVEVALQQNEIMNTFIDDWKNLAEEESTFGDKTDTHLKEYQSFTDLHNTMEKMITCVS 160 
WD40-rpts                                                                                      

Query      161 WHPTIFGLIVVSVAVRLSYEERVQNSGRLLLQPSLLLFWSFSDPIHPQLMLESPDDIFCFEFCPSDPNIIAGGCINGQIV 240 
WD40-rpts                                              (___________________WD 1________________

Query      241 LWDITAHADRIENIKTGGHRSKKTSLKPMFLLEPDSNKESMYIRHCAVSSIENGHRKVITDIHWLPDSFEINRMGSVFEN 320 
WD40-rpts      __)                                              (_______________________WD 2___

Query      321 RSGINCQLVTCSADCTICFWDIRPQKPAVTAAAAASAATTATNNANSQQSPVEKKKEENIDIPFDVPSTFLHLDLSWKPL 400 
WD40-rpts      ____________________)                                                           

Query      401 SRLKLSKGDTSLDHCPTKLSLGEDPFLCKIQGTSSIHIILRDKMLSQIKMVKTSEINPYQNLEAGIANILKPIEDFCTKF 480 
WD40-rpts                                                                                      

Query      481 FVGTEEGEVIYTDWKMERDSDTGRLMAKKPVSLYTVHDGAVHTIQRSPFFNDIVLTVGGWNVAIWKEEVMTGPLLQTCCG 560 
WD40-rpts                                 (_________________WD 3________________)    (_________

Query      561 PKRYTAGHWSLTRPGVFYIGREDGNVDIWDLLEKTHEPAQSQNICITMITYIKPWTFSSKQQFIAVADYYGTLHILEIPW 640 
WD40-rpts      ________WD 4_________________)(_____________________WD 5____________________)   

Query      641 TLSHPSLNEVSSVNYYFEREVRHLEYVQQRKEIREQEKIDMALELVKKKAKIYQKTKEQMEAELKLEYESYLDLEKSVLF 720 
WD40-rpts                                                                                      

Query      721 ALGLSKVSEKKSYLDSH 737 
WD40-rpts                       

5 WD40-repeats found in QUERY=ENSMUSP00000056965 (Len=737):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   201-243      4.66  307.29  0.00449       20.0%     44.85
  WD 2:  Seg 13   290-341      3.47  258.03  0.02056       32.5%     32.26
  WD 3:  Seg 25   508-546      4.35  294.51  0.00667       15.0%     44.58
  WD 4:  Seg 29   551-590      4.09  283.50  0.00937       22.5%     53.64
  WD 5:  Seg 33   591-637      3.93  276.96  0.01147       12.5%     51.20

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  201-243    FSD-------PIHPQLMLESPDDIFCFEFCPSDP-----------------NIIAGGCINGQIVLWD
   WD 2  290-341    --------------SIENGHRKVITDIHWLP-DSFEINRMGSVFENRSGINCQLVTCSADCTICFWD
   WD 3  508-546    -KK-------PV--SLYTVHDGAVHTIQRSP-FF-----------------NDIVLTVGGWNVAIWK
   WD 4  551-590    -TG-------PL--LQTCCGPKRYTAGHWSL-TR----------------PGVFYIGREDGNVDIWD
   WD 5  591-637    LLEKTHEPAQSQ--NICITMITYIKPWTFSS-KQ-----------------QFIAVADYYGTLHILE

   WD40 Template    TGE-------CL--RTLSGHTSGVTSVSFSP-DG-----------------KRLVSGSEDGTIKVWD