Input parameters:

  Query = ENSMUSP00000057320 (Len=1114)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000057320, Len=1114):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGALQAVALWGRKAPPHSITAIMITDDQQTIVTGSQEGQLCLWSLSPELKISAKELLFGHSASVTCLARARDFSKQPYV 80  
WD40-rpts      (____________________WD 1___________________)        (_________________WD 2_____

Query       81 VSAAENGEMCMWNVSSGQCVEKTSLPYRHTAICYYHCSFRMTGEGWLLCCGEYQDVLVLDAGTLAVLHTFTSLQSPDWMK 160 
WD40-rpts      ____________)          (________________WD 3_______________)(___________________

Query      161 CMCIVHSVRIQEDSLLVVSITGELKVWDLSSSINSIQEKQDVHEKESKFLDSFNCQTIRFCPYTERLLLVVFSKCWKIYD 240 
WD40-rpts      __WD 4_____________________)                (_______________WD 5_______________)

Query      241 YCDFSLLWTEVSRDGQFFAGGEVLAAHRILVWTEDGHSYIYQLLNRWAQMGATLRTFSGLSKCVCPADGGVLKGTVYPHL 320 
WD40-rpts         (_________________WD 6________________) (__________________WD 7______________

Query      321 LCSTSVEENKSLHFVMGYMNERKEPFYKVLFSGEVSGRITLWHIPDVPISKFDGSPREIPITTTWTLQDNFDKHQMVSQS 400 
WD40-rpts      ____)   (_______________WD 8______________)                                     

Query      401 ITDHFSGSRDEVGMTATITSSEYIPNLDKLICGCEDGTIFITKALNAAKAGLLEGDSLLKDSPCHTLLRGHHQSVTSLLY 480 
WD40-rpts               (______________WD 9______________)                  (__________________

Query      481 PHNLASKLDQSWMVSGDRGSYVILWDIFTEEILHTFFLEAGPVTRLLMSPENLKRSDGQILCCVCGDHSVALLHLEGRRC 560 
WD40-rpts      __WD10___________________)   (____________________WD11___________________)   (__

Query      561 LLRARKHLFPVRMIRWHPVENFLIVGCTDDSVYIWEIETGTLERHETGERARIILNCGDDAQLIRSEPTLSVASETHKHK 640 
WD40-rpts      _______________WD12________________)                                            

Query      641 SIEQKSSNSHQPGPVPCPSVQLESSCKVADASSVPRPFNVLPVKTKWSHIGFHVLLFDLENLVELLLPTPLSDVDPSGSF 720 
WD40-rpts                                               (_____________________WD13_____________

Query      721 YGGDILRRAKSTVEKKTLTIRRNKASCSSLQTEAQAKPSGDSLVLGDSTSKFSEENNGIKRQKKMKSSKKAHPKPPRKVD 800 
WD40-rpts      _______)                                                                        

Query      801 ASLTIDMAKLFLSCILPWGVDKDLDSLCTRHLSILKLQGPVSLGLASNEDLFSLMLPGWDACSTEMKEYSGVNLCSRKVL 880 
WD40-rpts                                                                                      

Query      881 DLSSKYTATLLHQTGIPRGLESHCDSVQQSDAIVYLLSRLFLVNKLVNMPLDLACEIDRPFKMETVHSKARFPGSDILNI 960 
WD40-rpts                                                                                      

Query      961 SSFYGHPKNGGNECRAPEADLSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLRNTPVSSQPDPVAEHSICERMQIS 1040
WD40-rpts                                                                                      

Query     1041 AKMEWTEELELQYVGKSSPLKTSVSPVKHGNDLNSANFQDTEDILDRCVLEESESAGQPRHRPWIAKVCSCRMC 1114
WD40-rpts                                                                                

13 WD40-repeats found in QUERY=ENSMUSP00000057320 (Len=1114):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-45       6.60  387.14  0.00038       20.0%     49.97
  WD 2:  Seg  6    54-93       6.13  367.99  0.00068       30.0%     43.55
  WD 3:  Seg 10   104-140      2.98  237.95  0.03800       17.5%     41.05
  WD 4:  Seg 13   141-188      3.80  271.56  0.01355       35.0%     53.64
  WD 5:  Seg 18   205-240      4.48  299.59  0.00570       15.0%     45.16
  WD 6:  Seg 21   244-282      4.83  314.35  0.00361       15.0%     54.43
  WD 7:  Seg 25   284-325      3.89  275.34  0.01206       12.5%     42.27
  WD 8:  Seg 29   329-363      4.64  306.40  0.00462       25.0%     42.70
  WD 9:  Seg 35   410-443      6.92  400.44  0.00025       30.0%     46.09
  WD10:  Seg 38   462-506      6.25  373.04  0.00058       32.5%     50.48
  WD11:  Seg 42   510-554      5.61  346.42  0.00133       27.5%     56.24
  WD12:  Seg 46   558-596      7.94  442.77  6.7e-05       22.5%     54.85
  WD13:  Seg 56   682-728      3.11  243.20  0.03238       15.0%     -8.01

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-45     MR--GALQAVALWGRKAPPHS--------ITA-------IMITD------DQQT---IVTGSQEGQLCLWS
   WD 2   54-93     AK--EL--------LFGHSAS--------VTC-------LARAR------DFSKQPYVVSAAENGEMCMWN
   WD 3  104-140    SL--PYRHT-------AICYY--------HCS-------FRMTG------EGWL---LCCGE-YQDVLVLD
   WD 4  141-188    AGTLAVLHT-----FTSLQSPDWMKCMCIVHS-------VRIQE------DSLL---VVSITGE--LKVWD
   WD 5  205-240    ------KES-----KFLDSFN--------CQT-------IRFCP------YTER---LLLVVFSKCWKIYD
   WD 6  244-282    -F--SLLWT-----EVSRDGQ--------FFA-------GGEVL------AAHR---ILVWTEDGHSYIYQ
   WD 7  284-325    LN--RWAQM---GATLRTFSG--------LSK-------CVCPA------DGGV---LKGTVYPHLLCSTS
   WD 8  329-363    -N--KSLHF-----VMGYMNE--------R-----------KEP------FYKV---LFSGEVSGRITLWH
   WD 9  410-443    --------D-----EVGMTAT--------ITS-------SEYIP------NLDK---LICGCEDGTIFITK
   WD10  462-506    -S--PCHTL-----LRGHHQS--------VTS-------LLYPHNLASKLDQSW---MVSGDRGSYVILWD
   WD11  510-554    -E--EILHT-----FFLEAGP--------VTR-------LLMSPENLKRSDGQI---LCCVCGDHSVALLH
   WD12  558-596    -R--RCLLR-----ARKHLFP--------VRM-------IRWHP------VENF---LIVGCTDDSVYIWE
   WD13  682-728    PV--KTKWS-----HIGFHVL--------LFDLENLVELLLPTP------LSDV---DPSGSFYGGDILRR

   WD40 Template    TG--ECLRT-----LSGHTSG--------VTS-------VSFSP------DGKR---LVSGSEDGTIKVWD